RNA id: XM_022678717.1


Basic Information

Item Value
RNA id XM_022678717.1
length 1682
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC111194482
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4384859 ~ 4386588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatatatatatatatatatatatatatatatagagagagagagagagagagagagtggtagagagacaGGTAGTTAGTGATGGAGATGACAGTGAGTGAGGGGGTCCGGTCCCCCCCCCTTCCCCCTCGGGTGCTGGTAGTAATTGTACATTGTTAAAGCTCTGCAGGGGGCTCTGTTGAGACAGTGCTGTTTAGAGGCGTCTCACAATAGCTCAGCTCAATCAAATCCTACAGTAATGTGCTGTCAAACCCTAACAAAGCACTGACACTATCTCACCCAGCTCACGCCTCGCCCGCTTCACAAACTCAGAGCTTCAGCCTCATTCTTCAGTTTTCAGTACAGTAATcacaaattcagaaaaaaagactGTCAATTAAAAGAAGCTTTAATATGTGACGTGTTCATCACAGACAGAAGGAACTCAAGACATTCATTCTTCTGCATCCACACCTGTGTAAATTATGCAGCATGTGGATttacattgtcttgttgaaatattttaatctcaggCTATTGCCTTTCCCCTTTGTGCTCTGAAATCCCTTCTGATTCCTTGAATGATTTAAAGATGTTAGgtgatgtggaaaaaaaaataattacaatctTTGTTTGAGGAACATTGCTTTTTACATCTCAATTATTTTCACATGGATTTGTTGATAAACTGGAAATTTACTTTCCACCATTGTTCCTCAAAGACACATTGGGTACTGCTCTTGTACTAAATCATGATTAAATTCACCTGTTTGAAATCACACCATAACTAACCTTAGAGAGTCTGACTGAGGTTGTGATTGAGTTCCTGACTGAGATTGTGATTGAGTTTCTGACTGAGGTTGTGATTGAGTTTCTGACTGAGATTATGATTGATGTTCTGATTGAGATTCTGACTGAGATTCTGATTGAGGTTGTGATTGAGTTTCTGACTGAGATTGTGATTGAGTTTCGGACTGAGATTCTGATTGAGGTTCTGATTGAGGTTCTGATTGAGGTTCTGATTGAGGTTGTAATTGAGTCTTTGACTGAGATTCTGACTGAGGTTGTTATTGAGGTTGTTATTGAGGTTCTGATTGAGGTTCTGATTGAGGTTCTGATTGAAATTCTGATTGAGGTTGTAATTGAGTCTTTGACTAAGATTCTGACTGAGGTTGTGATTGAAGTTCTGATTGAGGTTCTGATTGAAATTCTGATTGAGGTTGTAATTGAGTCTTTGACTAAGATTCTGACTGAGGTTGTGATTGAAGTTCTGATTGAGATTCTGATTGAGTTTCTGACAGAGGTTATGATTGAGATTCTGACTGAGGTTGTGATTGAGGTTGTGATTGAGATTCTAACTGGGGTTCTGACTGAGATTCTGATTGAGTTTCTGAAAGAGGTTGTGATTGAGGTTCTGACTGAGGTTGTGACTGAGATTCTGAAAGAGGTTGTGATTGAGATTCTGAAAGAGCTTGTGATTGAGGTTCTGGCTGAGTTTCTGACTGAGGTTGTGACTGAGATTCTGAAAGAGGTTGTGATTGAGTTTCTGACTGAGATTCTGACTGAGGTTGTGATTGAGATTCTGAAAGAGGTTGTGATTGAGGTTCTGGCTGAGATTCTGACTGAGGTTCTAACTGCTGGTGTTTCTGTGCTGTTCTGCAGGAGGAAGTATAAGAAGACGTCACAGAGGTAAGGCAGGccgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202107 lncRNA upstream 43392 4284928 ~ 4341467 (+) True G149278
TU202074 lncRNA upstream 158464 4171084 ~ 4226395 (+) True G149260
TU202065 lncRNA upstream 269313 4114171 ~ 4115546 (+) True G149251
TU202059 lncRNA upstream 281990 4100946 ~ 4102869 (+) True G149247
TU202044 lncRNA upstream 351666 4031287 ~ 4033193 (+) True G149239
TU202135 lncRNA downstream 110656 4497244 ~ 4810026 (+) False G149302
TU202156 lncRNA downstream 111433 4498021 ~ 4502936 (+) False G149302
TU202170 lncRNA downstream 111433 4498021 ~ 4812714 (+) False G149302
TU202160 lncRNA downstream 111840 4498428 ~ 4502936 (+) False G149302
TU202141 lncRNA downstream 112221 4498809 ~ 4811904 (+) False G149302
XM_022678720.1 mRNA upstream 7447 4292483 ~ 4377412 (+) True LOC111194484
XM_022678716.1 mRNA upstream 98660 4270017 ~ 4286199 (+) True LOC111194481
XM_022678711.1 mRNA upstream 261449 4121315 ~ 4123410 (+) True LOC103021386
XM_022678702.1 mRNA upstream 386800 3953403 ~ 3998059 (+) True LOC103047776
XM_022678703.1 mRNA upstream 386800 3953403 ~ 3998059 (+) False LOC103047776
XM_022678714.1 mRNA downstream 50280 4436868 ~ 4477488 (+) True LOC111194480
XM_022678715.1 mRNA downstream 50280 4436868 ~ 4477488 (+) False LOC111194480
XM_022678713.1 mRNA downstream 50293 4436881 ~ 4477488 (+) False LOC111194480
XM_022678729.1 mRNA downstream 122048 4508636 ~ 4512310 (+) True LOC103029581
XM_022678721.1 mRNA downstream 197725 4584313 ~ 4621712 (+) True LOC103045023
TU202070 other upstream 224753 4159200 ~ 4160106 (+) True G149256
TU202053 other upstream 253475 4126949 ~ 4131384 (+) True G149243
TU202027 other upstream 375124 4004918 ~ 4009735 (+) False G149226
TU201123 other upstream 2270394 2112673 ~ 2114465 (+) True G148599
TU200921 other upstream 3179459 1200285 ~ 1205400 (+) False G148442
TU202206 other downstream 119125 4505713 ~ 4510449 (+) False LOC103029581
trnal-uaa_9 other downstream 138038 4524626 ~ 4524708 (+) True trnal-uaa_9
trnal-uaa_10 other downstream 140481 4527069 ~ 4527149 (+) True trnal-uaa_10
trnal-uaa_12 other downstream 143122 4529710 ~ 4529792 (+) True trnal-uaa_12
trnal-uaa_13 other downstream 143846 4530434 ~ 4530516 (+) True trnal-uaa_13

Expression Profile