RNA id: XR_002651094.1


Basic Information

Item Value
RNA id XR_002651094.1
length 752
RNA type misc_RNA
GC content 0.53
exon number 5
gene id LOC111194484
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4292483 ~ 4386634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagtgagagagagagagagagagaatgagagagagagagaaaaaaaagagagagagtgattgcTTCCTCCCATCGCAGCTTCACTCCGGAGGCTCTCGCGCTCTCCCGAAgcttctcactctctcgctcttctgATTGACGGAACTGTAAGAGCTTTAAACTGAAGTGAATCCAGAGTATCGGAGCCGAGCTGCTTCACAaggaccagagagagagagagagagcaaagaacAAGGGATGACAGAGGCGAGTGCCAGGAAGAAGAGCTACAAGAAAGGGAGGAGTGCCACTTTCAGTATCGATGGGTTCAGCTTCACCATAGtggCTAATGAAGACGGAGAAAGCAACACCAGGCCACTGGCACCGTTTGCACGATCCAAGTCCCAGAATGCACTGTGGAACACCATCACTGCTGAAATGGGGATTACAGACAAGAGCCAGGGTCAGAGAGTCACTGCTGATGACCCTCGCAGCCCTGAGGAAATACTGGCAGAAGATTTCCCAGTTACATGTGGACCAGACGCCATGGAGAAGACCGCCTTAAGGCTCCTGTCCCAGACATGGAGTCTCCCACCAAAGAGATCGAGGAGTTTGAGAGCACCTCTCTGAAGTACCTCCAGCCGGACCAGATCGAGAAGATCTGGCTGCGACTACGAGGACTGAGGAAGTATAAGAAGACGTCACAGAGGTAAGGCAGGccgaagctgctgctgctgctgtgctgagTCACGGGGATTCCCTCTGCCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202074 lncRNA upstream 86216 4171084 ~ 4226395 (+) True G149260
TU202065 lncRNA upstream 197065 4114171 ~ 4115546 (+) True G149251
TU202059 lncRNA upstream 209742 4100946 ~ 4102869 (+) True G149247
TU202044 lncRNA upstream 279418 4031287 ~ 4033193 (+) True G149239
TU202028 lncRNA upstream 307133 4004918 ~ 4005478 (+) False G149226
TU202135 lncRNA downstream 110610 4497244 ~ 4810026 (+) False G149302
TU202156 lncRNA downstream 111387 4498021 ~ 4502936 (+) False G149302
TU202170 lncRNA downstream 111387 4498021 ~ 4812714 (+) False G149302
TU202160 lncRNA downstream 111794 4498428 ~ 4502936 (+) False G149302
TU202141 lncRNA downstream 112175 4498809 ~ 4811904 (+) False G149302
XM_022678716.1 mRNA upstream 26412 4270017 ~ 4286199 (+) True LOC111194481
XM_022678711.1 mRNA upstream 189201 4121315 ~ 4123410 (+) True LOC103021386
XM_022678702.1 mRNA upstream 314552 3953403 ~ 3998059 (+) True LOC103047776
XM_022678703.1 mRNA upstream 314552 3953403 ~ 3998059 (+) False LOC103047776
XM_007243473.3 mRNA upstream 630090 3678996 ~ 3682521 (+) True pter
XM_022678714.1 mRNA downstream 50234 4436868 ~ 4477488 (+) True LOC111194480
XM_022678715.1 mRNA downstream 50234 4436868 ~ 4477488 (+) False LOC111194480
XM_022678713.1 mRNA downstream 50247 4436881 ~ 4477488 (+) False LOC111194480
XM_022678729.1 mRNA downstream 122002 4508636 ~ 4512310 (+) True LOC103029581
XM_022678721.1 mRNA downstream 197679 4584313 ~ 4621712 (+) True LOC103045023
TU202070 other upstream 152505 4159200 ~ 4160106 (+) True G149256
TU202053 other upstream 181227 4126949 ~ 4131384 (+) True G149243
TU202027 other upstream 302876 4004918 ~ 4009735 (+) False G149226
TU201123 other upstream 2198146 2112673 ~ 2114465 (+) True G148599
TU200921 other upstream 3107211 1200285 ~ 1205400 (+) False G148442
TU202206 other downstream 119079 4505713 ~ 4510449 (+) False LOC103029581
trnal-uaa_9 other downstream 137992 4524626 ~ 4524708 (+) True trnal-uaa_9
trnal-uaa_10 other downstream 140435 4527069 ~ 4527149 (+) True trnal-uaa_10
trnal-uaa_12 other downstream 143076 4529710 ~ 4529792 (+) True trnal-uaa_12
trnal-uaa_13 other downstream 143800 4530434 ~ 4530516 (+) True trnal-uaa_13

Expression Profile