Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022678742.1 |
| length | 1156 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 1 |
| gene id | LOC111194490 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035913.1 |
| NCBI id | CM008316.1 |
| chromosome length | 28317440 |
| location | 5171266 ~ 5172421 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0048884 | neuromast development | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| id | description |
|---|---|
| K06087 | CLDN; claudin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU202599 | lncRNA | upstream | 58458 | 5111936 ~ 5112808 (+) | False | LOC111194607 |
| TU202562 | lncRNA | upstream | 133472 | 4962090 ~ 5037794 (+) | True | G149574 |
| TU202560 | lncRNA | upstream | 237032 | 4932964 ~ 4934234 (+) | True | G149572 |
| TU202558 | lncRNA | upstream | 238429 | 4930813 ~ 4932837 (+) | True | G149571 |
| TU202270 | lncRNA | upstream | 261435 | 4907417 ~ 4909831 (+) | True | G149366 |
| TU202637 | lncRNA | downstream | 51228 | 5223649 ~ 5226340 (+) | True | G149617 |
| TU202632 | lncRNA | downstream | 67356 | 5239777 ~ 5241013 (+) | False | LOC103023972 |
| TU202660 | lncRNA | downstream | 172423 | 5344844 ~ 5345434 (+) | True | G149635 |
| TU202670 | lncRNA | downstream | 200588 | 5373009 ~ 5375260 (+) | True | G149644 |
| TU202678 | lncRNA | downstream | 253471 | 5425892 ~ 5508053 (+) | False | G149652 |
| XM_022679370.1 | mRNA | upstream | 5303 | 5152565 ~ 5165963 (+) | True | LOC111194609 |
| XM_022679369.1 | mRNA | upstream | 28246 | 5140382 ~ 5143020 (+) | True | LOC111194608 |
| XM_022679368.1 | mRNA | upstream | 58668 | 5111324 ~ 5112598 (+) | True | LOC111194607 |
| XM_022678741.1 | mRNA | upstream | 119511 | 4974279 ~ 5051755 (+) | True | lrrc24 |
| XM_022678731.1 | mRNA | upstream | 294878 | 4849222 ~ 4876388 (+) | False | LOC103027894 |
| XM_022678743.1 | mRNA | downstream | 14417 | 5186838 ~ 5188742 (+) | True | LOC111194491 |
| XM_007240446.3 | mRNA | downstream | 20404 | 5192825 ~ 5194089 (+) | True | LOC103032323 |
| XM_007240447.3 | mRNA | downstream | 23720 | 5196141 ~ 5197618 (+) | True | LOC103032635 |
| XM_022679371.1 | mRNA | downstream | 29219 | 5201640 ~ 5204000 (+) | True | LOC111194610 |
| XM_022678745.1 | mRNA | downstream | 31872 | 5204293 ~ 5207059 (+) | True | LOC111194492 |
| TU202598 | other | upstream | 56550 | 5111685 ~ 5114716 (+) | False | LOC111194607 |
| TU202584 | other | upstream | 68908 | 5090982 ~ 5102358 (+) | True | G149595 |
| trnal-uaa_58 | other | upstream | 323530 | 4847655 ~ 4847736 (+) | True | trnal-uaa_58 |
| trnal-uaa_57 | other | upstream | 323720 | 4847465 ~ 4847546 (+) | True | trnal-uaa_57 |
| trnal-uaa_56 | other | upstream | 323910 | 4847275 ~ 4847356 (+) | True | trnal-uaa_56 |
| TU202617 | other | downstream | 23749 | 5196170 ~ 5199985 (+) | False | LOC103032635 |
| TU202835 | other | downstream | 552848 | 5725269 ~ 5727420 (+) | True | G149754 |
| TU202838 | other | downstream | 552848 | 5725269 ~ 5727420 (+) | False | G149754 |
| trnat-agu_4 | other | downstream | 1374283 | 6546704 ~ 6546777 (+) | True | trnat-agu_4 |
| trnat-agu_5 | other | downstream | 1374526 | 6546947 ~ 6547020 (+) | True | trnat-agu_5 |
