RNA id: XM_022678795.1


Basic Information

Item Value
RNA id XM_022678795.1
length 721
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC111194504
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6944489 ~ 6946968 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAATGTAGGAAACATGACTCTACTCTGTTTCACTGTCCATCTTCATCCTGGAGTCAGAACAATTGTGATAGAAGCAGTGAGGTGACTCACATTACCTGCTCCGGAGAGAAGAAACAGCTTGCATTTGAAAACCTTCAAAAATTCTTCTTATTTCCAAACCAGGATTACATGCCTATTAGGttgagaggaggagaggaaatcTGTTCTGGGAGGTTGGAGGTGTATCATAATGCTGAGTGGGGGTCTATATGTGCTGATCTGTGGGACATCAGGGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGGCCGGCGCTGAGTGCTAATAGAAGAGCTGTTGATGGTTCTGGTGGAGGAACTATCTGGATGAACAGAGTGAAGTGTAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCATTCCCTGAAGATCCACACTGGCTGCTCCCACAGTGCTGGAGTCACCTGTGCAGACATATTTGTCACATTACCTTTTTCATCTGAAACAACTACAACTTACACCACAGtaccagcacagctaacagagaaaaagacagtCCCTCCTTCAAAAAATCCATCATCTAATTTTCCATACATCTATCCAGTGTCTCTCCTGGTTCTGGGATCTGTGCTCTTCCTGGCCTTAGTGCTTCTGGTTGTGCTGTTTTATCAGAACAGAGTGCTCAGGAGAGGTAGGGAGATTTAGAGATCATCTAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203150 lncRNA upstream 1807 6935341 ~ 6942682 (+) True G149984
TU203157 lncRNA upstream 1807 6935341 ~ 6942682 (+) False G149984
TU203106 lncRNA upstream 50838 6893316 ~ 6893651 (+) True G149960
TU203089 lncRNA upstream 116717 6769964 ~ 6827772 (+) True G149944
TU203097 lncRNA upstream 137447 6804479 ~ 6807042 (+) True G149952
TU203172 lncRNA downstream 302197 7249165 ~ 7251366 (+) True LOC111194506
TU203177 lncRNA downstream 306058 7253026 ~ 7254591 (+) True LOC111194505
XR_002651108.1 lncRNA downstream 306059 7253027 ~ 7254335 (+) False LOC111194505
TU203182 lncRNA downstream 326237 7273205 ~ 7284336 (+) True G150002
TU203196 lncRNA downstream 427045 7374013 ~ 7383978 (+) True G150015
XM_022678794.1 mRNA upstream 3292 6939059 ~ 6941197 (+) True LOC111194503
XM_022678793.1 mRNA upstream 5506 6935130 ~ 6938983 (+) True LOC111194502
XM_007258400.3 mRNA upstream 38848 6894328 ~ 6905641 (+) True nmd3
XM_015608157.2 mRNA upstream 38848 6894439 ~ 6905641 (+) False nmd3
XM_022678787.1 mRNA upstream 219144 6702236 ~ 6725345 (+) False smc4
XM_022678801.1 mRNA downstream 570036 7517004 ~ 7540136 (+) False LOC103022780
XM_022678802.1 mRNA downstream 570039 7517007 ~ 7540136 (+) True LOC103022780
XM_022678803.1 mRNA downstream 579058 7526026 ~ 7540136 (+) False LOC103022780
XM_007230642.3 mRNA downstream 582572 7529540 ~ 7540136 (+) False LOC103022780
XM_022678805.1 mRNA downstream 659521 7606489 ~ 7611611 (+) True srprb
trnat-agu_11 other upstream 206455 6737961 ~ 6738034 (+) True trnat-agu_11
trnat-agu_10 other upstream 209321 6735095 ~ 6735168 (+) True trnat-agu_10
trnat-agu_9 other upstream 395264 6549152 ~ 6549225 (+) True trnat-agu_9
trnat-agu_8 other upstream 395660 6548756 ~ 6548829 (+) True trnat-agu_8
trnat-agu_7 other upstream 396742 6547674 ~ 6547747 (+) True trnat-agu_7
XR_002651109.1 other downstream 302481 7249449 ~ 7251366 (+) False LOC111194506
TU203302 other downstream 822716 7769684 ~ 7805254 (+) True G150099
TU203337 other downstream 927672 7874640 ~ 7879301 (+) True G150131
TU203562 other downstream 1701862 8648830 ~ 8656708 (+) True G150321
TU203913 other downstream 2608691 9555659 ~ 9567097 (+) True G150579

Expression Profile