RNA id: XM_022678830.1


Basic Information

Item Value
RNA id XM_022678830.1
length 2229
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC103031660
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8522150 ~ 8580869 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTCGGCTGAACACGACGGTGAAGCCGGCCAGCGAGTTGGGAAGTCCCGCTGCGGAGCTGCGGAGCGAGCGGGCAGAGCGGGGGTCCAGCTCCGCCGGAGCCTCCAACGGGGGATTTACCACTGAAGCCGGCGGGGGGAGCCGAGGAGCCGGGGGTCTGTGCAGCCGTGCAGCTGCTGACCGCAAGGTTACTGAAGTGCAgccaaagagagaaagaagagctGGAGAAGAAGTCCTCACAGTCCCCCAAACATGCGCCCTCAGAGCCGGGGGAGTTCCGCTGCGCTACCTGTGAGTCTGAGGGTCAttagagaagcagcagcagcggcgtcCAGCTGTGCGGACCTTCTCCTCCACTgaagataaagaagaagaagctacAGGAGGAGTGCGGGGCTCTGCGTTTCTCTGCAGCTTCACTGAGGTGCTGGTGGTCCCTCTctgagaggaggaagaggaggaggaggggggctAGGGAAGAAGATAAAGGAGTTctgaaagagataaagagatatcTACCTGTCTTTCTACTGTTTTCAACGAAATGGGaaaagggTCTTCACCTGTCCAGTAAGAATGTTTCCGACCCACAGAGAGAGGGAGCAGCCCATTTTCAGCTCTCGAGCTCATGTGTTCCAGATCGATCCAGCCACTAAACGTAACTGGATTCCAGCCAGCAAGCATGCTGTCACCGTCTCCTTCTTCTACGACGCCAACCGGCACGCCTACCGCATTATCAGTGTGGGGGGCACCAAGGCCATCATTAACAGCACAATCACACCCAACATGACATTCACCAAGACGTCACAGAAGTTTGGCCAGTGGGCAGACAGCAGGGCGAACACTGTGTACGGCCTGGGCTTCGCCACCGAGCAGCAGCTTCATCAGTTTTCCGAGCGCTTCAAAGAAGTAAAGGAAGCCGCTCGTCTGGCCAGAGAGAAATCACAGGATAAGCTGGAAATGGTCAACCCTGCCCTGAACATCGCAGCCCCACAGTTCTCTCAGgacTTGTCAGACGAGCTGCAGTCCCCACCGGTGATGTGTGTGAACGGGCCAGATGACAAGCTGTTCCGCAGCCAGAGTGCAGACATCACGCTTTCCTCAGAGAAAGAACGCATCAAAAAGATGCTGTCGGAGGGCTCGATCTGTGAGATGAACCTGGAGGCCGAACTGTTCACCCTGCAGGACAGCAATGCTAAACTGGTGGCAGCGCTGCATGAAGCTAATGCCAACGTGGATCAGTGGAAGAAGCAGTTGGCGGCCTATCAGGAGGAGACGGAGAGGCTGAGGGACCAGGTGGCAGATTTGGAGGCTCATGGAGGTCAGGGCCCCAGTGACATGCTGAAGGACGAGCTCACTCAGTCTCTGGAGGAACTGGAGGCCTTACTCAGAGCTAAAGATGAGGAAATACGCATTCTTCAAGCCAAGAAGTCAGACTTTCATGAGATGgagcaggagagagaagaaGCCATTCACAGACTACAGGAGCTGGAGATGCGTAATGTGGATCTGGAGAGGAGGGTGCAGAACTCCGAGCAGAGTCTGGCCTCCACTCTGGAGGATCGGGATCGCACGGATAGCGAGATCCAGAGGGTCGTCCAGATCCTCGACGTCAAGATCTTCGACCTCAATGACCTCCGTCAGAGCCTGGTCAAACTGCTGGAGAAATAGTGGAGTGAGGTGACCTTCTGACTGACCCTGAGGAGACGGAGAGAGACGCTACGGCGTCTCGGCCTCGGCTCAGCGGCCGGGCTCCCGGTATAAACGGCCCGCGTTCAGGAGGTGCCACATTTCAGCACGTAGAGTAGCTACGCTTTTCTAATAGAGAACAGGGAACAGGGCTAGGATGTGCTAGTTAatcatacacactctctcagtTTTCCGTTTTCAGGTTTCTTTGGTGTTTTCTCTCCGTTTTTCAGTATGATGACAGTTTCTGTTAACAGATTAGCAATAACTCTGTTTCTCTGAGTTTCTCTTGAGTTGAGTTGTTCAGTATTaggttaataataatgataataataattgagGGGAAAGCACTATTTTTGATACAGCGTGTGGAGCATGGCTGTAgtggaatatacagtataagcaGAGATGTATTATAAgtaacatattatatataagttgtgttatatattataagttATAGATGTAAACGTAAACACGTAAATGCATATTTACACAAAACAGAGGGTAGAATTAACCAGTATGGTActctttttaatt

Function

GO: NA

KEGG:

id description
K15010 HOMER; homer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203536 lncRNA upstream 84748 8436595 ~ 8437402 (+) True G150297
TU203501 lncRNA upstream 197502 8313027 ~ 8324648 (+) True G150269
TU203473 lncRNA upstream 212716 8257912 ~ 8309434 (+) True G150248
TU203531 lncRNA downstream 1575 8582444 ~ 8585056 (+) True G150292
TU203544 lncRNA downstream 11272 8592141 ~ 8592375 (+) True G150305
TU203557 lncRNA downstream 59022 8639891 ~ 8640174 (+) True G150317
TU203559 lncRNA downstream 61499 8642368 ~ 8647191 (+) True G150318
TU203746 lncRNA downstream 304919 8885788 ~ 8886029 (+) True G150469
XM_022678828.1 mRNA upstream 2818 8495095 ~ 8519332 (+) True upf1
XM_022678829.1 mRNA upstream 2818 8495095 ~ 8519332 (+) False upf1
XM_022678827.1 mRNA upstream 29128 8483546 ~ 8493022 (+) True pgpep1
XM_007235968.3 mRNA upstream 127527 8386302 ~ 8394623 (+) True LOC103032299
XM_022678825.1 mRNA upstream 148964 8369369 ~ 8373186 (+) True LOC103029326
XM_022678841.1 mRNA downstream 87053 8667922 ~ 8680860 (+) True LOC111194513
XM_022678846.1 mRNA downstream 196791 8777660 ~ 8783198 (+) True polr2e
XM_022678849.1 mRNA downstream 284702 8865571 ~ 8878804 (+) True LOC103025531
XM_022678857.1 mRNA downstream 653812 9234681 ~ 9254117 (+) True eef2
XM_022678858.1 mRNA downstream 697596 9278465 ~ 9359957 (+) True LOC103031140
TU203337 other upstream 642849 7874640 ~ 7879301 (+) True G150131
TU203302 other upstream 716896 7769684 ~ 7805254 (+) True G150099
XR_002651109.1 other upstream 1270784 7249449 ~ 7251366 (+) False LOC111194506
TU203154 other upstream 1574214 6943665 ~ 6947936 (+) False G149984
trnat-agu_11 other upstream 1784116 6737961 ~ 6738034 (+) True trnat-agu_11
TU203562 other downstream 67961 8648830 ~ 8656708 (+) True G150321
TU203913 other downstream 974790 9555659 ~ 9567097 (+) True G150579
TU204035 other downstream 1270349 9851218 ~ 9852854 (+) True G150674
XR_002651121.1 other downstream 1561255 10142124 ~ 10151893 (+) False LOC103031168
XR_002651122.1 other downstream 1561255 10142124 ~ 10151874 (+) False LOC103031168

Expression Profile