RNA id: XM_022678866.1


Basic Information

Item Value
RNA id XM_022678866.1
length 4870
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC103028184
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9525333 ~ 9584009 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctttcttttgtttttcttttcctttctttttccttctaTTTTCCTCCTGTTCTTTTTGCGGCGTGATGCTGGACTGATCGATGGATTGCTgttgagaagaagaagaagaagctttGGTTTGAGAGGGGGAGggagaaggagtgagagagacagaaagaaggagacagacagagacagaaagaggatagacagagagagagagggagggaggcgaGAAGGCAGCATCTCTCTCATTCTCGCCATGGAGCTCATGGAGAACCTCAGTAACATGCACGGCGTCTCGCACGCGCAGGCAGCGGGCGATCTGATGACCGTGGCGCACTCGCGCCCCTCGCCCGGCCCTCCGCCGCCCCACCGCAGCCTTGTGTCGCACGGGCGCTCGGCCATGGTCTCGAGCATGGCGTCTATCCTGGAGGGAGCCGGCGAGTACAGGAGCGACGCGGCCGCGCTAACCGGCCACTTGCACGCGGCCGCCATGAGCATGTGCGAGCCGGGCATGGGCCTGTCCAGCACCTACACAACGCTCGCGCCCTTGCAGCACCTGCCGCCCATCTCCACGGTGTCGGACAAGTTCCATCCGCACGCTCACCCCCACGCGCACCCGCATCACCCGCACGCGCACCACGCGCACCCGCACCACGCGCACCAGCGCCTCACCGCAGGCAACGTCAGCGGCAGCTTCACGCTCATGCGCGACGAACGCGCATCCGGCGGCTTGGTCGGCAACTTGTACGGCCACCACTACCCCAAGGATGTGACAGGCATGGGCGCGCCGCTCTCGCCGCTCTCCAACGGGCTGGGCGCGCTGCATAGCTCGCAGAACGCACTCTCCGCCGCCTACGGCCCCGCGAGCGCCGCCGGATTCGAGCCGCACGCAGCCATGCTGTCGCGCAGCGAGGAGCACCTGGCGCGCAGCCTGGGCGGCGGAGGCGGTGGCGCGCACGCCGTCCTCTCCAACCTCAACGGCATGCACCCGCACGGGCACCTCCACGCGCAGGCCGCCATGCTGGTCGAGCGCGAGAGGCACGCGGTGGTCGGCGGCGTGGGCCACGGCGTAGGCGGCGGCGGAGGAGGCGGAGGTGGAGGAGGGAGCCAAGTGGAGGAGATCAACACCAAAGAGGTGGCGCAGCGGATCACCGCCGAGCTGAAGCGCTACAGCATCCCGCAGGCCATCTTCGCCCAGCGGATCCTCTGCCGCTCGCAGGGAACACTGTCCGACCTGCTGCGCAACCCTAAGCCCTGGAGTAAGCTCAAGTCCGGCAGAGAGACCTTCAGGAGGATGTGGAAGTGGCTGCAGGAGCCCGAGTTCCAGAGGATGTCCGCGCTCAGGCTGGCCGCCTGCAAGAGGAAGGAGCAGGAGCAGCACAAGGACCGCAACCTGGCACCCAAAAAGCAGCGGCTGGTCTTCACCGACCTCCAGCGGCGCACGCTCATCGCCATCTTCAAGGAGAACAAGAGGCCGAGCAAGGAGATGCAGATCACCATCTCGCAGCAGCTGGGCCTGGAGCTCTCCACCGTCAGCAACTTCTTCATGAACGCACGCCGCCGCTGCGTGGACCGCTGGCACGACGAGGCCAATGGCAGCCCAGGCCAGCCGGGCACCTCTGCCACCACCTTCTCTAAGGCCTGAGCGCCTGACCCACTGCGTCCGCCGCTGGTCAGAGCCTTGACCCACTCTGACGGGTCTGGACCAGCGGTGGCAGCAGTGGCGACAAGTTCACGTGTGGCGTCCGTCCGTCCATACAAGCTCGAGAAACCTCAACCTGCTCGGCCGAGGGGGCATGGCCAATACCGGAGGCCCCTAGTACTTGGACACAAGCTGCCCTATGACCAGTGATAAGGGGGTCTGCAGGCATGCTCTGGTCTTTTAGCCTGTGGTTTATGTCTTTGTTTATTCGGTTGCCATATTCACTTCAGCGGAGGTTTTATTTTCAATATGGCATCCGTCGTTTGTTTGTTAATCGCCCAAAGAAGGCCTAAGGCCTGATCTGAAGGTTTCTAGGCTTGATATTTAAGCCTTAAGCCTTCAGTCTTAAATCTCATCGCCCTTTGTTCCTCGAGATGTTGGTCTTTTACGTTGAACTTCTTGTCGTTTTCCACGACCTTTGTCTTTTTAGAACAAGTTAGGAACGAATAAGAAAGAGGAGATGGCAATAAGTGTCCCAACACATTCCCCTTCTACTTTGTTCTGTAATCAGTGAGGCGACAACCAGAAGGTCTGGCCGAGATCCTGAGGCTTCACTGCTTACGTAGCTCATtccagttagcattagcataaagTCAGCCATTTCTTATGAATTTGACTTGGAATTCGATGGCGATGGCCGGGAGAATTTAGACAAAGGAACATGGAGGTTGCGCGTCACAATCATATGCCTCAGACGCGTTAGATGTCTAAATTCTCGGGCCACgccacacacttttttttctccacatgattttattcctgtcctgATTCCTGATCACGTCTCCTCACGTCCCcccacctacccacctacccTACTGCCAGCGTGGCTCCATGCTCTTGCTTCAGCACAATGAGAAAGGGATTGGAAGAATCAATCAGTCCTCTGTGCTGGCCCCCTCAGAATCATTTTAGCCCATGGGGGCCAGCCAGAGCGCTCCTCATGCACAGAGCAATGGTGCCACCTACTGGACGAACACAGCTTTGACctctaaaatgtttttcatgatCTTTTTTACGTTCTCAACAACCATTGCCGTCTCATAACTCCATGAGTGTTTTTATAGGGGGCCAAGCAAAACTTGGTTGTTCAACCTGTAatgcttacttttttcagtaatgcttgattttcttgttatttttgCATGAAGTTCGATGTTTATATCCAAAGGTATTTTCATTTAccaaagatataaaaaaaaacaaagaagaaacaATCATTACTCAAAGGGAGTAGGGTAGAGTACAGCTGCTGCTCGCTTCCTCCAGTATGCGGAGGAAGGCAGTGTCTAGTGGCCAAACGTAAAAGGTAAAATGTCACTGTATGATTGAGTGCCAATGACAGATGCCTTAATGATAATCATGGGGGGTGGAGCGGCTCCGAGCCGCAAAACGCTCCAAATCCCTCTCTTCCCTCCCTCCATTCTGTACGATTCGGGGTCCGTGCCGGACCAAAACCCGACAAATGACAAATCATGCAAAACCAACCAAAACCTGACGGTGGGTGAAGACCTACCTCTCATCCTTGACACCAAATGTGTGTCAAAATAGCTCCACAAGGTTACAAAAGCTCCAAAGAACACAGTATAACCAATATCTTCTGCAAATGAAAGCTCCTGTAAAtatttcttctgtctctttcttctgTCCTTCTTCCTTTCCCCTTCCTTACACTCCTTCCTATCCTCTTTCCCTTCGCCCcaacctctccctctctttcccttctATAATAACGATGCGGGTAATTAGTACCATAGACACAAAGTTTCTATTAAATGTAACTCTTTGTGCTCTGTTGTGCATAAACTACAAGTAAAGAAGCACCTTGTTAACGAATTTGCGAAGAAGTCGACAAACGAAAAGCAAAAGCGAGCGCAAATGCGAATGCTCTGAGGGAGACAAAAAGCTACGGGAGCAATCAGAGACAACCGCAGCGAGAGAAAAAATAAGGGTTGTTGTGTATACTGTAAACCTGGACGGATGTGATGatgtttatgaaaaaaaatgatggactCCAAGCTGGAGCAGCCTCTGAACTTCAACCTCTCTGGCATCTTCTGAACTGGACCTTTCTCAAACATGGATCATGGTTCAGTTGTGGGATCATGGTTCACGACTAACGTTAACGAATGACactctaaaaaaagaaagttcatCGCCATGTTTGGAATCTGAGAGCCTTTTAGATTGCTTTGGTCTGGAAGAGGTTCTCAATCAATCAAAGTCAGTCTCAATcaatcatcattttttttcgaTACCAAGACTGAGACCAGTCATAGATCTTCTCATTCCCTGGTTTGAATCTAAGAGTCTCTCAGAATGCTTGGGCCTGGAAGACGTTCTCAATCAATCAAAGTCAGTCCCAGTCAAGCATCACTGATGACAGCAAGACTGAGACTGGTCCTGGGTCTTCTTATTCCCTGGTTTGAATCTGAGAGCCTCTTAGATTGCTTTGGTCTGGAAGATGTTTTCAGTCAATCGAAGTCATTGTCAGTCTCAGTCAATCATCACTGACGACACCAAGACTGAGACAGGTCTTGGCTCTTCTGATTACCTGGTTTGAATCTGAGACCCTTTCAGATTGTTTTGGTCTAGAAGATGTTCTCAGTAAATCAAAGGGTGCATGCAATTCCATCCAGATTGATGTCATCAAGCTGGACATTGGGGAACAGCtctgaaactggagaaaaaaagccAAATGTACATTTGTAGCATCAAACAATGGACAAACAAGGAGAACACAAAGAAGCCAAATGTCATAACACCACAGGTACCACCTACCAATGACCGTGTCCAGAGCCGGAGAGGTttagaggtgtttttttttaaagcaaggtTCTTAAACAATGTTGTTTCAGAGTCAAATGTGaagcaaaaatgtgaaaaaaaaaaaaaatctgaacacaCTCACgtacacacatgcaaacacacacacacacacacaaatacacacatcgTTTGTAGTGAGAACCAGTGCGGCTACCTCACAGAACAATTGTGGCACATGTGACACGGCCACTGATACCAAAGATACTTCGGCCTGCCAGTTCTACCAGATCGTACACAAACTCCATTCATTTCTATCTGTCCATCTTCTTCATGTGTCGTTGTTTTATACtgaatacacacaaatacacacaattacacatgcactgatcagttataacattatgaccattgtgctct

Function

GO: NA

KEGG:

id description
K24170 ONECUT2; one cut domain family member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651119.1 lncRNA upstream 12778 9509854 ~ 9512555 (+) True LOC111194518
TU203902 lncRNA upstream 35069 9481817 ~ 9490264 (+) True G150572
TU203899 lncRNA upstream 38597 9471472 ~ 9486736 (+) True G150569
TU203901 lncRNA upstream 46870 9474337 ~ 9478463 (+) True G150571
TU203895 lncRNA upstream 73206 9451921 ~ 9452127 (+) True G150568
TU203914 lncRNA downstream 15451 9599460 ~ 9600049 (+) True G150580
TU203921 lncRNA downstream 75051 9659060 ~ 9667287 (+) True G150586
TU204017 lncRNA downstream 181062 9765071 ~ 9765448 (+) True G150663
TU204028 lncRNA downstream 203459 9787468 ~ 9790595 (+) True G150669
TU204029 lncRNA downstream 203459 9787468 ~ 9790595 (+) False G150669
XM_022678858.1 mRNA upstream 165376 9278465 ~ 9359957 (+) True LOC103031140
XM_022678857.1 mRNA upstream 271216 9234681 ~ 9254117 (+) True eef2
XM_022678849.1 mRNA upstream 646529 8865571 ~ 8878804 (+) True LOC103025531
XM_022678846.1 mRNA upstream 742135 8777660 ~ 8783198 (+) True polr2e
XM_022678841.1 mRNA upstream 844473 8667922 ~ 8680860 (+) True LOC111194513
XM_022678868.1 mRNA downstream 225317 9809326 ~ 9819170 (+) True LOC111194519
XM_022678871.1 mRNA downstream 246094 9830103 ~ 9837255 (+) True plekhj1
XM_007241591.3 mRNA downstream 289957 9873966 ~ 9882127 (+) True LOC103025670
XM_022678876.1 mRNA downstream 315319 9899328 ~ 9926814 (+) True LOC111194523
XM_022678875.1 mRNA downstream 315319 9899328 ~ 9904999 (+) False LOC111194523
TU203562 other upstream 868625 8648830 ~ 8656708 (+) True G150321
TU203337 other upstream 1646032 7874640 ~ 7879301 (+) True G150131
TU203302 other upstream 1720079 7769684 ~ 7805254 (+) True G150099
XR_002651109.1 other upstream 2273967 7249449 ~ 7251366 (+) False LOC111194506
TU203154 other upstream 2577397 6943665 ~ 6947936 (+) False G149984
TU204035 other downstream 267209 9851218 ~ 9852854 (+) True G150674
XR_002651121.1 other downstream 558115 10142124 ~ 10151893 (+) False LOC103031168
XR_002651122.1 other downstream 558115 10142124 ~ 10151874 (+) False LOC103031168
XR_002651120.1 other downstream 558115 10142124 ~ 10150129 (+) False LOC103031168
XR_002651123.1 other downstream 558115 10142124 ~ 10148318 (+) False LOC103031168

Expression Profile