RNA id: XR_002651120.1


Basic Information

Item Value
RNA id XR_002651120.1
length 2001
RNA type misc_RNA
GC content 0.49
exon number 5
gene id LOC103031168
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 10142124 ~ 10152717 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGCGGAAGTGAATGAGAGAGTGGAGCACAGAGAGTAAACACAGCTGTAGGGGTGAAGCTGAGGGTCTGAATGAACTGAGATATCTCCCGCTGGATTAAAGCAGTGAGGGCTGGAAGATGTCTGGAGCCGCTGCGGCGCTGGAGGCGCGGGTCTGGTCGGTGATGGAGAGCCTGGCGAAGGCGGCGGCGACGGAGATCTGTGCGCTGGTGGACTCGCAGTGCGTGGAGATGCGGCTGGAGATCCGGAGGAGCCAGGGCGAGATCCAGAGCCTGAGGGGGAAAGTGAGGGATCTGAGGGCAGCTCTGAGAGATAAACCCCTCTCCACTGCCCCTCAGATCAACCCTCAGAtgggagaggcagagagagATATGAATGCTGATGATCTCCACCAGGAGGCCAATTGTGAGgataaagaggaagataaaaAGACAAGTTCCTCAGGACTGATAAACTTTCATGAGGATTCCAACCTAGACTTTGTGAATTCACATCTTAACTCTGGTATTACACACACTGAGTTTAGACAGCCCCAGATCCTCAGTGACTCTCTGAATTCTGAGGATAAAGCAGATGCAGGAGGACTCAACACAGCAGCTGTAAAACTGGAGGCCGGAAGTTACTCTGTGTCCACAGCAGAGTGTGACTTTGAGAACTCCCAGAATGACCAGAAGCTATGCACAGATGCACAAGAGCCAGAGATGGgtGATGGAGACAGTCCATTTGGCAATATAGAAGACTTCCATCCCCAGTCTTATTATCCAGTGCAGTCCAATCAGTCTGAAGAGCCATCGTCCTGCAAATACGATGCAGTCTTAATTCGTATGAATGAGCCGAGAAACAGTAAAGGGAATCCAAGTAGGGTGGAGTTTAAGATCGAGCCAGAGGAGGAGCCAATAGAGGAAAGGATAAATGAACTGCCACCCTGTGAGATGACGGACGGCGATGGTTTGCCATGGCCCTTTTTGACTGCCGGGAACTTCGAGACACAAGGACACGTCGACAATCCATTTGGCAGAATAGAAGACTTCCATCCTCAGTTTCATTATTCAGCGCAGTCCTATCAGTCCGAAGAGGCATCGTCCTGCAAATACAATGCAGCATTTAGACGTATGAATGAGTCGAAAAATGGTGAAGGGAATCCAAGTAGAATGGAGTTTAAGACTGAGCCAGAGGAGGAGCCAATAGCGGAGAGGATGAATGAATTGGCACCGTGTGAGATGACAACCAGCGATGCATTATCATGGCCCTTTTTGACTGCAACTAACTTTGAGATACAAGGTTCTTCTTCTCAAACTGACCCCCAGCTGTTTCAGCTTGCAGGGACCAGTGACCAGAGTTTACCCTCTTGCATTATAAGGAATACAGTCCTTCCTTGTGCAAAACAGCCGAAGACAAGAAACATGCAGGCCCAAATTCAAGTCAGAACCGTCAAACAGAACTCAGTTGGCAGTTTGTCGGCGAAGCAGACCAAGGTGAAGAATCAGCCGAAAACAAGAACGCACAAGCGCTGGACTTGTTCTTATTGTCCTAAAAGCTTCAACAACACGTCCACCCTGAATAGACATCAACGCATCCACACAGGCGAGAAGCCATTTGGCTGTGCGGTGTGTGGGAAACGGTTTGCCGACAGAGGGAACCTCATCACCCATGAGAGAGGGCACAGTGGCAGCAAACCCTATACCTGCCAGCAGTGTGGAAAAAGCTTTGCCCATTGCTCCAATTTAACCGCCCAtcagcgcgttcacactgggGAAAAACCCTTCTGTTGTTCGCTGTGCGGGAAGTCATTTGCTTGGCATTACCCTTTCAAAAGACACATGGCTCTGCATGGTCAGAATGGCCCAACCAAAGGACTATAACGATGACTCTACACCTTTTGCTGCCAGGTCAAgttttctaaaatataaacaagGACACATCGACAATCCATGTGGCAGAATAGAAGACTTCCATCCTCAGTCTCATTATTCGGCGCAGTCCTATCAGTCCGAAGAGGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204114 lncRNA upstream 22355 10119321 ~ 10119769 (+) True G150733
TU204105 lncRNA upstream 45362 10094591 ~ 10096762 (+) True G150725
TU204063 lncRNA upstream 110048 10010250 ~ 10032076 (+) True G150698
TU204077 lncRNA upstream 117145 10015211 ~ 10024979 (+) True G150709
TU204072 lncRNA upstream 143860 9990474 ~ 9998264 (+) False G150705
TU204118 lncRNA downstream 18197 10168326 ~ 10178477 (+) True G150735
TU204152 lncRNA downstream 41391 10191520 ~ 10279830 (+) False LOC103021810
TU204163 lncRNA downstream 130341 10280470 ~ 10281215 (+) True G150752
TU204168 lncRNA downstream 151244 10301373 ~ 10307405 (+) True G150757
TU204161 lncRNA downstream 180617 10330746 ~ 10363375 (+) False LOC103040721
XM_015603646.2 mRNA upstream 1611 10133810 ~ 10140513 (+) True LOC103032326
XM_022678893.1 mRNA upstream 87702 10051320 ~ 10054422 (+) True LOC111194527
XM_022678892.1 mRNA upstream 92374 10042726 ~ 10049750 (+) True LOC103032638
XM_022679372.1 mRNA upstream 224651 9916454 ~ 9917473 (+) True LOC111194611
XM_022678875.1 mRNA upstream 237125 9899328 ~ 9904999 (+) False LOC111194523
XM_007241656.2 mRNA downstream 43831 10193960 ~ 10207846 (+) True LOC103021810
XM_022678898.1 mRNA downstream 170140 10320269 ~ 10361468 (+) True LOC103040721
XM_007242241.3 mRNA downstream 232751 10382880 ~ 10386158 (+) True LOC103040403
XM_022678901.1 mRNA downstream 240350 10390479 ~ 10407671 (+) True LOC111194532
XM_022678902.1 mRNA downstream 240350 10390479 ~ 10407671 (+) False LOC111194532
TU204035 other upstream 289270 9851218 ~ 9852854 (+) True G150674
TU203913 other upstream 575027 9555659 ~ 9567097 (+) True G150579
TU203562 other upstream 1485416 8648830 ~ 8656708 (+) True G150321
TU203337 other upstream 2262823 7874640 ~ 7879301 (+) True G150131
TU203302 other upstream 2336870 7769684 ~ 7805254 (+) True G150099
TU204186 other downstream 259664 10409793 ~ 10442243 (+) False LOC111194616
XR_002651126.1 other downstream 292861 10442990 ~ 10443712 (+) True LOC103024215
TU204458 other downstream 472530 10622659 ~ 10626011 (+) False mau2
TU204536 other downstream 590604 10740733 ~ 10741138 (+) True G150935
TU204715 other downstream 1402410 11552539 ~ 11561544 (+) True LOC103037021

Expression Profile