RNA id: XM_022678907.1


Basic Information

Item Value
RNA id XM_022678907.1
length 1089
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC103021908
representative False

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 10558114 ~ 10583740 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCACTTTTTTCCTCTCAGGCTTCCTCATTCCCAGCTCAGGCTCAGGCAGTCTGAATGGAAAAAGTTGGAAAACTTAGTTTTTGAGAGAAAACAGATAAACGAGCTGGGAATTTCCTTataaagtgagtttttttgatagtaaattactttttgtttatttagtgtatCTCGTTCAACTCAGGCTGAGTTAGCCAGGAATTAGCCCGGTTTTAGCCCGGTAATGTCTGCGAACTCGCTGGACGCGGTGAAGAGGAAGATCCAGGCGCTGCAGCAGCAGGCGGACGATGCGGAGGACCGAGCGCAGCTGCTGCAGAGGGAGCTGGACGAGGAGCGAGACAACCGGGAGAAAgcagaAGGTGAGGTGGCTGCTCTGAACCGCAGGATTCAGCTGATTGAGGAGGAGCTGGACCGCGCTCAGGAGAGATTGGCCACTGCGCTCCAGAAGCTCGAGGAAGCAGAGAAACAAGCAGATGAGAGCGAGAGagGCATGAAGGTGATTGAGAACCGGGCAACGAAAGACGAGGAGAAGATGGTGATGCAGGAGTTGCAGCTGAAGGAGGCCAAACAGGTTGCTGAGGACTCCGATCGCAAGTACGATGAGGTAGCTCGTAAGCTGGTCATTCTGGAAGGTGAACTGGAAAAAGCAGAGGAGAGAGCGGAGATCTCTGAGCTCAAAGGAGGTGACTTAGAGGAAGAGCTCAAGAACGTAACAAACACCCTAAAGTCTCTTGAAGCCCAGTCAGAGAAGtacGCAGACAAAGAAGATCGATATGAGGAGGAGATCAAAGTCCTCACTGACAGACTGAAAGAGACGGAAACCCGTGCTGAGTTTGCAGAGAAGACCATGGCCAAACTGGAAAAGACCATTGATGACCTCGAGGAGAGCATAGCCAACTCAAAGCAGGAGAATCTGAATCTGCACCAAGTCCTGGACCAAACCCTGCAGGAGCTTAACAGCTTGTGAGCATCACAAAGAGGAGACATACCGACAGCAATCAACATTCCACACTTCTCATCAAgcattcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204407 lncRNA upstream 50362 10512088 ~ 10518923 (+) True G150883
TU204412 lncRNA upstream 50362 10514548 ~ 10518923 (+) False G150883
TU204410 lncRNA upstream 50902 10514548 ~ 10518383 (+) False G150883
TU204400 lncRNA upstream 53631 10512088 ~ 10515654 (+) False G150883
TU204192 lncRNA upstream 135272 10414913 ~ 10434013 (+) False LOC111194616
TU204467 lncRNA downstream 136762 10720502 ~ 10724360 (+) True G150902
TU204468 lncRNA downstream 136762 10720502 ~ 10723132 (+) False G150902
TU204469 lncRNA downstream 136762 10720502 ~ 10724360 (+) False G150902
TU204470 lncRNA downstream 136762 10720502 ~ 10724360 (+) False G150902
TU204474 lncRNA downstream 136762 10720502 ~ 10724360 (+) False G150902
XM_022679380.1 mRNA upstream 116795 10440723 ~ 10452490 (+) True LOC111194617
XM_022679379.1 mRNA upstream 132791 10409959 ~ 10436494 (+) True LOC111194616
XM_022678901.1 mRNA upstream 161614 10390479 ~ 10407671 (+) True LOC111194532
XM_022678902.1 mRNA upstream 161614 10390479 ~ 10407671 (+) False LOC111194532
XM_007242241.3 mRNA upstream 183127 10382880 ~ 10386158 (+) True LOC103040403
XM_007238412.3 mRNA downstream 2019 10585759 ~ 10593172 (+) True rab8a
XM_022678909.1 mRNA downstream 24858 10608598 ~ 10621005 (+) True sugp1
XM_022678910.1 mRNA downstream 24863 10608603 ~ 10621005 (+) False sugp1
XM_022678911.1 mRNA downstream 39129 10622869 ~ 10635541 (+) True mau2
XM_022678915.1 mRNA downstream 61650 10645390 ~ 10693383 (+) False LOC103022822
XR_002651126.1 other upstream 125573 10442990 ~ 10443712 (+) True LOC103024215
TU204186 other upstream 127042 10409793 ~ 10442243 (+) False LOC111194616
XR_002651122.1 other upstream 417411 10142124 ~ 10151874 (+) False LOC103031168
TU204458 other downstream 38919 10622659 ~ 10626011 (+) False mau2
TU204536 other downstream 156993 10740733 ~ 10741138 (+) True G150935
TU204715 other downstream 968799 11552539 ~ 11561544 (+) True LOC103037021
XR_002651134.1 other downstream 1004169 11587909 ~ 11604041 (+) False LOC103035375
TU205216 other downstream 2519405 13103145 ~ 13107515 (+) False LOC103033117

Expression Profile