RNA id: XM_022678957.1


Basic Information

Item Value
RNA id XM_022678957.1
length 4232
RNA type mRNA
GC content 0.43
exon number 9
gene id creb3l3
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 12129169 ~ 12175408 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCAAGTCAATCACATGCTGATTAtctgagctttcagactttgCCCTGGAACAGAAATCAACAGCCCAGACCTGGAGGAAAACACAGTGAGGCCTAAACCTGAGAAACCTGGAATAATTCAGGCTTTAATAATCAGCTCTCTGGATGTGTAAACCAGCTTTGTAGGTTTGTAAGATTTGTAAGTACTGTACAAGGACATCACTGCTTCCCACATGGCTCTGCTTTCAGATAAGTTGCTGAGTCAGCATGAAGATGTGGACGATCATTTCCTGGACTCCCTGCTGTGCATGTCAGAGTGTTTGTCAGACCCCGGGTCTCCCCTCTGGGCCCCGTCTCCCTGTGACAGCGGCATTAGCGAGGACCCCCCATCTGATCAGCGGGAAACCCCACCTCCACCCTCCAGCCCGCTCTTCCAAACCTTCTTCCACCCTCAGGTTCCTGTTCCTCAGGCTCAGCCACAGCACCATCTGCAGCGGCAGCAGGCCGGATCCGCCCCCAACTCTGCAGAACCAGACGTGTCCATTGATGTGGCTCCCTGGGACTCCAGTGCATTCGTGTACAGGCCTGTGGTCTCTCAGTCTTTGAATCCAGAAAATTCTTCAGTTTATCAGCTCAGTGTGAAGGACCTGCTGCTGTCCAGCCTGGGAGAACCGCCCAAGCAGTTCTCAGAGAGCTCACTGCAGGAGCTCAGCCTTAATGATGATGAAAAGAAACTTCTGGCCAAGGAAGGAGTGTGCCTGTCCAACCAGCTTCCTCTCACCAAGTATGAGGAAAAGGTCTTGAAGAAGATTCGCAGAAAGATTCGAAACAAGCAGTCGGCACAGGAGagcagaaagaagaagaaagagtaTGTTGATGGCCTAGAAGTGAGAATGGCTGCCTGCAGTGCGCAGAATCTGGAGCTTCAGAAGAAAGTGGTCCGGCTGGAGAGAAACAACACgTCTCTAATGGAGCAGCTGCGGAGGCTCCAGGCTCTGGTCATGAATGGTTCCTGCAAACCCGCTCACACTGGCACTTGCATCCTGgtgCTGATCATATCATTCTCTCTTATCCTGTTCCCCAGTCTACAGCCGGTGTCCCTTAGCAGAGCTGGGCAGTCAGGGGACTTCACCACAGCTAGAGTCCAGTCGCGCTCGCTGCGCTCTGTAATGGAGGTCCATAGCCTGCAGCCAGTCCTGACGTTGGACAGAGGGGTGAAGACGGCCTCCTCCATGATTAGCAAGATACACATCAGGCCTGAATACGCAGACATGGACCACCCACCTCACAACCATAGCTATGGAGACAAGGAGCAGCATCATCATGGCGACCCCATCACTGGGCACATGGGCACACTGGGCTGGATGTCCCAACCTGACTCGGGACTGCATCTTCAGAAAGACAGGAAATGATGTAATGAGTGGTTGGAATGATAGATGTGTTTGTCCGTCTACAgcagtttggaggaaaaatgCAGGAGAGTTTTTGCAAAGTGTTTTTGAGAAGTGTTGCCTGCAAAAGAagaaagataaatgtgctattGGAAACAGACAATGGCCTGGCTGTGACTGTTCCGGCTGCCCGAGAGGACATTATGGTGGGCGTCAGGAGCGttctcagaaagagagagtttgCAGAAGAACTGCTTTGATCGCCTGTATTAAAGCATTCCAATACCAAACTCTTTACAGACACTGCCTGTTTAGTTTTGATGTGAATAGATAAGAAAGACAAGATAGCAGTGTTAGCACATTCCTCTTTATGTTTCTCTTCACTGGGTTGCTGTGAATGGTATATTTAAGTTTGCCTTTGCAGTTGAAGCCTTTAACACAGCGAGGGTCTCTGCATTTAAACAGTCTTGTTGCCTAGCATTGTGATAAATTATGGGTGTTGACCACAAGAGCATCATCAGGAATATTGTCCAGTGCTTAGATAGTTCCCCAACCAATGTATTTACCAATGGGTATTTTACATGTGAAACAGTTAAGTGTTTCAGgtgtaattttttcttttctttcctgtaCCGTACCCTATTCTTCAATAGCCATGCCTTTGCCTTGTCTTGTTGAAAACACATGGATGTCCCTAAAAGAAAAAGGTTCTTCTTGGAAGCCATCTCAGAAGTGTAAGTCACAGAAGtactgagaacagtctggatggttctCAGATGGTGTGCTGATCCATCTCAGATGCCTCTGAGCCCAGAGAAGTTGACACCATCTGTGGACATTGTTAACATAAGGCTTTTGTTTAGCAGAATAAAGTATTATAGTGCTTGACAATGGTTTACCAAGGTCATCCCTTGCCCATATGTTTCTATCAGCTATTGCTAAATTATGGTTCTTATCCAGATCTTACATAGCAGGTTTTCAGCTGACCCTTAATCTGTTGAAGAAATAAACTTGATAATAATGCTTGCATGGTTTTCTTTGGTTTTAACATCAACATCAGGGTTTACCTTTGGAATGGTTTCAAACCAAATGAGAAAAGCATGAGGtctcattttaattttagactTCTATTCTGAGAATCTTAGGCTCGGTTCACACAGCAGCTAATAGTAGTGGCTCAAATTCGATTTTCTGACCAAATccaatatttacagtattttaagcTGTTCACACATTCATTTTAAGGTGATCCATATCTGACACTATGGAATTGAATGGTTTTTCATGGTGGAGCAGTTTCATCTGAGCCTCACCTCACCAAGCATGATGTGAAGTCAGATGTGTCAGATGCAGTAATGGGAAGCTCACAGCCATTGTACACTAGAGCAGTGGAGATGTCTTTTCTCTAGAGTGATGAACCACCCTTCTTTGGCTGGCAATCTGATGGTGGTGGAGTCGGGGTTTGGTTGTTACCAGGAGAATGGTGCTTGTCTGACTGGATTGTGccgagtgtaaagtttggtagaggggggattatggtgtttttttttttttttttttccattcttcaTTCTTTTCAGGAATTGTACTCGACCCCTTAGTTTCAGTGAAAGgaactcttaatgcttcagcTTACCAGGAGATTTTGCAAAATGTCATGCTCCCAACTTTGTGAGGACAGTTTGGGGACAGTCCCTACCAGTTTTAGACAATGGATGAGCAAGTTTAAAATGTCAAACCTTGACTTTATTGAATAGAACAACTTTGGGATGAATTAGAGTGGAGAATGCATGCAAAAAGACAGGCAAGCAAATTCGTTtagcaatattttatatattatgaaAAAGATTTGGGCCACAAGGACCTGTTGTGTTTCTTAGAAGCTGAATTTCAGAAGTGGGGGGAAATTGCTTTAATATTAAGTCTCACATCAGACTTAACAACGTCTAGAAGAAATAAACAAGCCAAAAAATggtcttaaatatttttttctctgagtAGGACTGCATCCTTGGCCTATATGCAATTAAATTCCTTCTGAATCAGTGAAtagtttaatgatattatgcacTGTAGAGGGAGAAATGTTCAAATCTCTTCCAGTTTTAATTtgaggaacattgtttttaaacgtTTCAGTAGTTTTCTCATGATGGAAATCCTCTGCCAATCTTCGCTCCTCAGTATTGTGAATAATGTTTTTGTACCTAATCATGATTACAGTCACCTGTtcatatcattattatttatttgtttttaccctATTGCTAACCTTAAATTGTCTCTGCTCCTGTTGCATGCCTGAAATGCAGTAATGGGTGTATATTAAAGGAgatctctggtgtaaaattgattttagtgtagtaaaatatgataaagagaactaacctttgttgaaaaCCCCTCCCACCACCACTCTCCCTGGTtagtacagtaatggcggcaCCCGGTGATTAGCTAAAGctacgggttgtaaacagtgttttttaataagctattTGTTCAcctttaaagttaaagttaaagttaatgcctcgttttaaatgtcaggactctctggattctaccaatgaagtgtgaagctactttgagcctggataacggtgtaaaaagcgatttatcaagGGCAAAATATGCCACAAAGCGCCCTTTGTAAAGAgtgcaaaaagcacaaaattactggatctcaaagctttatcatgttttactacactaaaagtcaattttacaccagagttttcTTTAATAACTGAAATGAAGCAGACCAGATATAACCCCTatataactactactactactaatgtaTATACCAGTGGGTATTTTATATGTgtaaaattcaaaataaagCCACTCTTAAAGCAA

Function

GO: NA

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204928 lncRNA upstream 24811 12092076 ~ 12104358 (+) True G151230
TU204924 lncRNA upstream 34054 12089178 ~ 12095115 (+) True G151229
TU204921 lncRNA upstream 36189 11999323 ~ 12092980 (+) True G151226
TU204922 lncRNA upstream 44569 12082322 ~ 12084600 (+) True G151227
TU204861 lncRNA upstream 165646 11963109 ~ 11963523 (+) True G151181
TU204965 lncRNA downstream 13382 12188790 ~ 12191234 (+) True G151251
TU204971 lncRNA downstream 43150 12218558 ~ 12218877 (+) True G151257
TU204980 lncRNA downstream 73082 12248490 ~ 12249187 (+) True G151264
TU204988 lncRNA downstream 117674 12293082 ~ 12293521 (+) True G151272
TU205030 lncRNA downstream 368656 12544064 ~ 12607087 (+) True G151302
XM_007258433.3 mRNA upstream 321695 11762992 ~ 11807474 (+) True LOC103033776
XM_022678950.1 mRNA upstream 369955 11727535 ~ 11759214 (+) True LOC103042008
XM_022678949.1 mRNA upstream 407494 11714071 ~ 11721675 (+) False LOC103034099
XM_022678948.1 mRNA upstream 407494 11714132 ~ 11721675 (+) False LOC103034099
XM_022678947.1 mRNA upstream 407494 11714175 ~ 11721675 (+) True LOC103034099
XM_007258450.3 mRNA downstream 8421 12183829 ~ 12187233 (+) True LOC103040483
XM_022678961.1 mRNA downstream 120075 12295483 ~ 12522294 (+) True LOC103039850
XM_022678960.1 mRNA downstream 120306 12295714 ~ 12522294 (+) False LOC103039850
XM_022678970.1 mRNA downstream 673010 12848418 ~ 12875728 (+) True LOC107197877
XM_022678971.1 mRNA downstream 673010 12848418 ~ 12875728 (+) False LOC107197877
XR_002651134.1 other upstream 525128 11587909 ~ 11604041 (+) False LOC103035375
TU204715 other upstream 567625 11552539 ~ 11561544 (+) True LOC103037021
TU204536 other upstream 1388031 10740733 ~ 10741138 (+) True G150935
TU204458 other upstream 1503158 10622659 ~ 10626011 (+) False mau2
XR_002651126.1 other upstream 1685457 10442990 ~ 10443712 (+) True LOC103024215
TU205216 other downstream 927737 13103145 ~ 13107515 (+) False LOC103033117
trnar-ccg_2 other downstream 1100103 13275511 ~ 13275583 (+) True trnar-ccg_2
trnar-ccg_3 other downstream 1104444 13279852 ~ 13279924 (+) True trnar-ccg_3
trnar-ccg_4 other downstream 1105288 13280696 ~ 13280768 (+) True trnar-ccg_4
trnar-ccg_5 other downstream 1105746 13281154 ~ 13281226 (+) True trnar-ccg_5

Expression Profile