RNA id: XM_022679369.1


Basic Information

Item Value
RNA id XM_022679369.1
length 754
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC111194608
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5140382 ~ 5143020 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACAAACTTCAGTCTTCAGTCAAGCTGCTTCACTCAGAAACAGGAAGTGTATTAGTGTTTAGAGACTCAGAACAGAATCATGCACTTTTACTCTCTCATCAGTTCTTTaattctctctgtgtttctgctcTTCATCTCAGGTTCTGAGAGCGTGAAGACACTGAAACGTTTAACTGTAAGAAGAGGAGGATCTCTCACTGTTCCTTGTTTATATGAAGAGGAATATAAATCACACCGTAAATACTGGTGTAAGGGGGGAACCTGGTCCTCATGTACAATAGTAGCCAAAACCAACACAAGAAATACAGGAATATCAATCACTGATCATCCATCCCAGAATATGTTTACTGTGGATCTGAAGAAACTCCAAGACTCTGACTCTGGATGGTACTGGTGTGCTTTGGAAATCGATGGTCCAGATGACGGGGATTCTGTGTATCTGACGGTCAGTTCAGATCCTGCTGTGTGGGTGGAGAACAGTAGAGTGATTGGTCAGGAAGGGGGCGGAGTCAGTGTCCAGggtaactacagctctggatatAAGAATGAAGAGAAGAAGTGGTGCAGATTTAAAGACTGGAGCTGCTACACCTTCCAGGATTCAACAGTGAAGATCAGTGATGATGAGAACAGAGGATCCTTCAGAGTGGAGATGATTGGTCTGCAGGAGAGTGATGCTGGCTGGTACTGGATCAGTGCAGGAGGTGTGGCGGTTACTGTTCACCTCACTGTCACTGAAAGACCTACAATgtga

Function

GO: NA

KEGG:

id description
K20395 CD300B_D_F; CO300B/D/F antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202599 lncRNA upstream 27574 5111936 ~ 5112808 (+) False LOC111194607
TU202562 lncRNA upstream 102588 4962090 ~ 5037794 (+) True G149574
TU202560 lncRNA upstream 206148 4932964 ~ 4934234 (+) True G149572
TU202558 lncRNA upstream 207545 4930813 ~ 4932837 (+) True G149571
TU202270 lncRNA upstream 230551 4907417 ~ 4909831 (+) True G149366
TU202637 lncRNA downstream 80629 5223649 ~ 5226340 (+) True G149617
TU202632 lncRNA downstream 96757 5239777 ~ 5241013 (+) False LOC103023972
TU202660 lncRNA downstream 201824 5344844 ~ 5345434 (+) True G149635
TU202670 lncRNA downstream 229989 5373009 ~ 5375260 (+) True G149644
TU202678 lncRNA downstream 282872 5425892 ~ 5508053 (+) False G149652
XM_022679368.1 mRNA upstream 27784 5111324 ~ 5112598 (+) True LOC111194607
XM_022678741.1 mRNA upstream 88627 4974279 ~ 5051755 (+) True lrrc24
XM_022678735.1 mRNA upstream 263994 4849208 ~ 4876388 (+) True LOC103027894
XM_022679370.1 mRNA downstream 9545 5152565 ~ 5165963 (+) True LOC111194609
XM_022678742.1 mRNA downstream 28246 5171266 ~ 5172421 (+) True LOC111194490
XM_022678743.1 mRNA downstream 43818 5186838 ~ 5188742 (+) True LOC111194491
XM_007240446.3 mRNA downstream 49805 5192825 ~ 5194089 (+) True LOC103032323
XM_007240447.3 mRNA downstream 53121 5196141 ~ 5197618 (+) True LOC103032635
TU202598 other upstream 25666 5111685 ~ 5114716 (+) False LOC111194607
TU202584 other upstream 38024 5090982 ~ 5102358 (+) True G149595
trnal-uaa_58 other upstream 292646 4847655 ~ 4847736 (+) True trnal-uaa_58
trnal-uaa_57 other upstream 292836 4847465 ~ 4847546 (+) True trnal-uaa_57
trnal-uaa_56 other upstream 293026 4847275 ~ 4847356 (+) True trnal-uaa_56
TU202617 other downstream 53150 5196170 ~ 5199985 (+) False LOC103032635
TU202835 other downstream 582249 5725269 ~ 5727420 (+) True G149754
TU202838 other downstream 582249 5725269 ~ 5727420 (+) False G149754
trnat-agu_4 other downstream 1403684 6546704 ~ 6546777 (+) True trnat-agu_4
trnat-agu_5 other downstream 1403927 6546947 ~ 6547020 (+) True trnat-agu_5

Expression Profile