RNA id: XR_002651126.1


Basic Information

Item Value
RNA id XR_002651126.1
length 122
RNA type ncRNA
GC content 0.46
exon number 3
gene id LOC103024215
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 10442990 ~ 10443712 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACTTCTGACAAGAAAACTGTTGAACCAACAGACACTCCAGCAGCTGTGACTTCAGCTACTGGAAAATCTGAGAAACCCGAGGCTCCTACTAATCCTCCAGATGAGGAGACTACGACTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204192 lncRNA upstream 8977 10414913 ~ 10434013 (+) False LOC111194616
TU204161 lncRNA upstream 79615 10330746 ~ 10363375 (+) False LOC103040721
TU204168 lncRNA upstream 135585 10301373 ~ 10307405 (+) True G150757
TU204163 lncRNA upstream 161775 10280470 ~ 10281215 (+) True G150752
TU204152 lncRNA upstream 163160 10191520 ~ 10279830 (+) False LOC103021810
TU204400 lncRNA downstream 68376 10512088 ~ 10515654 (+) False G150883
TU204407 lncRNA downstream 68376 10512088 ~ 10518923 (+) True G150883
TU204410 lncRNA downstream 70836 10514548 ~ 10518383 (+) False G150883
TU204412 lncRNA downstream 70836 10514548 ~ 10518923 (+) False G150883
TU204467 lncRNA downstream 276790 10720502 ~ 10724360 (+) True G150902
XM_022679379.1 mRNA upstream 6496 10409959 ~ 10436494 (+) True LOC111194616
XM_022678901.1 mRNA upstream 35319 10390479 ~ 10407671 (+) True LOC111194532
XM_022678902.1 mRNA upstream 35319 10390479 ~ 10407671 (+) False LOC111194532
XM_007242241.3 mRNA upstream 56832 10382880 ~ 10386158 (+) True LOC103040403
XM_022678898.1 mRNA upstream 81522 10320269 ~ 10361468 (+) True LOC103040721
XM_022678905.1 mRNA downstream 114402 10558114 ~ 10583740 (+) False LOC103021908
XM_022678904.1 mRNA downstream 114402 10558114 ~ 10581973 (+) True LOC103021908
XM_022678907.1 mRNA downstream 125573 10569285 ~ 10583740 (+) False LOC103021908
XM_022678906.1 mRNA downstream 125579 10569291 ~ 10581973 (+) False LOC103021908
XM_007238412.3 mRNA downstream 142047 10585759 ~ 10593172 (+) True rab8a
TU204186 other upstream 747 10409793 ~ 10442243 (+) False LOC111194616
XR_002651121.1 other upstream 291097 10142124 ~ 10151893 (+) False LOC103031168
XR_002651122.1 other upstream 291116 10142124 ~ 10151874 (+) False LOC103031168
XR_002651120.1 other upstream 292861 10142124 ~ 10150129 (+) False LOC103031168
XR_002651123.1 other upstream 294672 10142124 ~ 10148318 (+) False LOC103031168
TU204458 other downstream 178947 10622659 ~ 10626011 (+) False mau2
TU204536 other downstream 297021 10740733 ~ 10741138 (+) True G150935
TU204715 other downstream 1108827 11552539 ~ 11561544 (+) True LOC103037021
XR_002651134.1 other downstream 1144197 11587909 ~ 11604041 (+) False LOC103035375
TU205216 other downstream 2659433 13103145 ~ 13107515 (+) False LOC103033117

Expression Profile