RNA id: trnal-uaa_12


Basic Information

Item Value
RNA id trnal-uaa_12
length 83
RNA type tRNA
GC content 0.57
exon number 1
gene id trnal-uaa_12
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4529710 ~ 4529792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCAGgatggccgagtggttaaggcgttGGACTTAAGATCCAATGGGCAAATGCCCACGTGGGTTCGAGCCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202168 lncRNA upstream 26270 4498809 ~ 4503440 (+) False G149302
TU202166 lncRNA upstream 26270 4501889 ~ 4503440 (+) False G149302
TU202156 lncRNA upstream 26774 4498021 ~ 4502936 (+) False G149302
TU202160 lncRNA upstream 26774 4498428 ~ 4502936 (+) False G149302
TU202150 lncRNA upstream 26774 4498809 ~ 4502936 (+) False G149302
TU202223 lncRNA downstream 94038 4623830 ~ 4627706 (+) True G149335
TU202225 lncRNA downstream 94038 4623830 ~ 4625235 (+) False G149335
TU202239 lncRNA downstream 189284 4719076 ~ 4771503 (+) True G149340
TU202232 lncRNA downstream 230208 4760000 ~ 4764845 (+) False LOC111194485
TU202236 lncRNA downstream 235145 4764937 ~ 4771503 (+) False G149340
XM_022678729.1 mRNA upstream 17400 4508636 ~ 4512310 (+) True LOC103029581
XM_022678714.1 mRNA upstream 52222 4436868 ~ 4477488 (+) True LOC111194480
XM_022678715.1 mRNA upstream 52222 4436868 ~ 4477488 (+) False LOC111194480
XM_022678713.1 mRNA upstream 52222 4436881 ~ 4477488 (+) False LOC111194480
XM_022678719.1 mRNA upstream 143122 4384859 ~ 4386588 (+) False LOC111194482
XM_022678721.1 mRNA downstream 54521 4584313 ~ 4621712 (+) True LOC103045023
XM_022678722.1 mRNA downstream 154816 4684608 ~ 4763729 (+) True LOC111194485
XM_022678723.1 mRNA downstream 154817 4684609 ~ 4763729 (+) False LOC111194485
XM_022678724.1 mRNA downstream 154818 4684610 ~ 4763729 (+) False LOC111194485
XM_022678725.1 mRNA downstream 154819 4684611 ~ 4763729 (+) False LOC111194485
trnal-uaa_10 other upstream 2561 4527069 ~ 4527149 (+) True trnal-uaa_10
trnal-uaa_9 other upstream 5002 4524626 ~ 4524708 (+) True trnal-uaa_9
TU202206 other upstream 19261 4505713 ~ 4510449 (+) False LOC103029581
XR_002651093.1 other upstream 143076 4292483 ~ 4386634 (+) False LOC111194484
XR_002651094.1 other upstream 143076 4312611 ~ 4386634 (+) False LOC111194484
trnal-uaa_13 other downstream 642 4530434 ~ 4530516 (+) True trnal-uaa_13
trnal-uaa_14 other downstream 1584 4531376 ~ 4531458 (+) True trnal-uaa_14
trnal-uaa_15 other downstream 2017 4531809 ~ 4531891 (+) True trnal-uaa_15
trnal-uaa_16 other downstream 2693 4532485 ~ 4532567 (+) True trnal-uaa_16
trnal-uaa_17 other downstream 2923 4532715 ~ 4532797 (+) True trnal-uaa_17