RNA id: trnal-uaa_18


Basic Information

Item Value
RNA id trnal-uaa_18
length 83
RNA type tRNA
GC content 0.55
exon number 1
gene id trnal-uaa_18
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4533906 ~ 4533988 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCAGgatggccgagtggttaaggcgttGGACTTAAGATCCAATGGGCAAATGCCCGCGTGGGTTCGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202168 lncRNA upstream 30466 4498809 ~ 4503440 (+) False G149302
TU202166 lncRNA upstream 30466 4501889 ~ 4503440 (+) False G149302
TU202156 lncRNA upstream 30970 4498021 ~ 4502936 (+) False G149302
TU202160 lncRNA upstream 30970 4498428 ~ 4502936 (+) False G149302
TU202150 lncRNA upstream 30970 4498809 ~ 4502936 (+) False G149302
TU202223 lncRNA downstream 89842 4623830 ~ 4627706 (+) True G149335
TU202225 lncRNA downstream 89842 4623830 ~ 4625235 (+) False G149335
TU202239 lncRNA downstream 185088 4719076 ~ 4771503 (+) True G149340
TU202232 lncRNA downstream 226012 4760000 ~ 4764845 (+) False LOC111194485
TU202236 lncRNA downstream 230949 4764937 ~ 4771503 (+) False G149340
XM_022678729.1 mRNA upstream 21596 4508636 ~ 4512310 (+) True LOC103029581
XM_022678714.1 mRNA upstream 56418 4436868 ~ 4477488 (+) True LOC111194480
XM_022678715.1 mRNA upstream 56418 4436868 ~ 4477488 (+) False LOC111194480
XM_022678713.1 mRNA upstream 56418 4436881 ~ 4477488 (+) False LOC111194480
XM_022678719.1 mRNA upstream 147318 4384859 ~ 4386588 (+) False LOC111194482
XM_022678721.1 mRNA downstream 50325 4584313 ~ 4621712 (+) True LOC103045023
XM_022678722.1 mRNA downstream 150620 4684608 ~ 4763729 (+) True LOC111194485
XM_022678723.1 mRNA downstream 150621 4684609 ~ 4763729 (+) False LOC111194485
XM_022678724.1 mRNA downstream 150622 4684610 ~ 4763729 (+) False LOC111194485
XM_022678725.1 mRNA downstream 150623 4684611 ~ 4763729 (+) False LOC111194485
trnal-uaa_17 other upstream 1109 4532715 ~ 4532797 (+) True trnal-uaa_17
trnal-uaa_16 other upstream 1339 4532485 ~ 4532567 (+) True trnal-uaa_16
trnal-uaa_15 other upstream 2015 4531809 ~ 4531891 (+) True trnal-uaa_15
trnal-uaa_14 other upstream 2448 4531376 ~ 4531458 (+) True trnal-uaa_14
trnal-uaa_13 other upstream 3390 4530434 ~ 4530516 (+) True trnal-uaa_13
trnal-uaa_19 other downstream 220 4534208 ~ 4534290 (+) True trnal-uaa_19
trnal-uaa_20 other downstream 665 4534653 ~ 4534735 (+) True trnal-uaa_20
trnal-uaa_21 other downstream 895 4534883 ~ 4534965 (+) True trnal-uaa_21
trnal-uaa_22 other downstream 1102 4535090 ~ 4535172 (+) True trnal-uaa_22
trnal-uaa_23 other downstream 1403 4535391 ~ 4535473 (+) True trnal-uaa_23