RNA id: trnal-uaa_33


Basic Information

Item Value
RNA id trnal-uaa_33
length 83
RNA type tRNA
GC content 0.57
exon number 1
gene id trnal-uaa_33
representative True

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4558983 ~ 4559065 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCAGggtggccgagtggttaaggcgttGGACTTAAGATCCAATGGGCAAATGCCCACGTGGGTTCGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202168 lncRNA upstream 55543 4498809 ~ 4503440 (+) False G149302
TU202166 lncRNA upstream 55543 4501889 ~ 4503440 (+) False G149302
TU202156 lncRNA upstream 56047 4498021 ~ 4502936 (+) False G149302
TU202160 lncRNA upstream 56047 4498428 ~ 4502936 (+) False G149302
TU202150 lncRNA upstream 56047 4498809 ~ 4502936 (+) False G149302
TU202223 lncRNA downstream 64765 4623830 ~ 4627706 (+) True G149335
TU202225 lncRNA downstream 64765 4623830 ~ 4625235 (+) False G149335
TU202239 lncRNA downstream 160011 4719076 ~ 4771503 (+) True G149340
TU202232 lncRNA downstream 200935 4760000 ~ 4764845 (+) False LOC111194485
TU202236 lncRNA downstream 205872 4764937 ~ 4771503 (+) False G149340
XM_022678729.1 mRNA upstream 46673 4508636 ~ 4512310 (+) True LOC103029581
XM_022678714.1 mRNA upstream 81495 4436868 ~ 4477488 (+) True LOC111194480
XM_022678715.1 mRNA upstream 81495 4436868 ~ 4477488 (+) False LOC111194480
XM_022678713.1 mRNA upstream 81495 4436881 ~ 4477488 (+) False LOC111194480
XM_022678719.1 mRNA upstream 172395 4384859 ~ 4386588 (+) False LOC111194482
XM_022678721.1 mRNA downstream 25248 4584313 ~ 4621712 (+) True LOC103045023
XM_022678722.1 mRNA downstream 125543 4684608 ~ 4763729 (+) True LOC111194485
XM_022678723.1 mRNA downstream 125544 4684609 ~ 4763729 (+) False LOC111194485
XM_022678724.1 mRNA downstream 125545 4684610 ~ 4763729 (+) False LOC111194485
XM_022678725.1 mRNA downstream 125546 4684611 ~ 4763729 (+) False LOC111194485
trnal-uaa_32 other upstream 426 4558475 ~ 4558557 (+) True trnal-uaa_32
trnal-uaa_31 other upstream 755 4558146 ~ 4558228 (+) True trnal-uaa_31
trnal-uaa_30 other upstream 1279 4557622 ~ 4557704 (+) True trnal-uaa_30
trnal-uaa_29 other upstream 1608 4557293 ~ 4557375 (+) True trnal-uaa_29
trnal-uaa_28 other upstream 2130 4556771 ~ 4556853 (+) True trnal-uaa_28
trnal-uaa_34 other downstream 201 4559266 ~ 4559348 (+) True trnal-uaa_34
trnal-uaa_35 other downstream 868 4559933 ~ 4560015 (+) True trnal-uaa_35
trnal-uaa_36 other downstream 283404 4842469 ~ 4842550 (+) True trnal-uaa_36
trnal-uaa_37 other downstream 283594 4842659 ~ 4842741 (+) True trnal-uaa_37
trnal-uaa_38 other downstream 283785 4842850 ~ 4842932 (+) True trnal-uaa_38