RNA id: TU210445


Basic Information

Item Value
RNA id TU210445
length 438
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G155234
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 330837 ~ 331274 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTTAATCTGCTTTAACATGAGAATTTAACAAATAACCCATATAACCTGCCAAGTGGGGTCTGTATGGGTAGCTCTACTGGGAACCAGAACATTTTTACCATAAGCTCCAAGTTGGCCCCACATATGAATATCAGTGATGGGCCCAACTGGGGTTTTCAGTGATGGGTCATGTCCCGGTTGTACACTGCACACAGAGACTAGCTAGGACTCATTTAATATTAAGGGTGCTGTAATAATGGGTAAAAACACATGTGAACACCCACTCAGAGCCTATTACCGCCTGGAAAGTCAGTGTTTTGTATAGTAAAGCAACTCTGCCACCTAATGGTCATAAACATGAACTACAGCCACCAGACAGCCACAGTAGGGAGAGTCAAAAGTCTCAGGACTTCTGTTTCAGAAATGAAAGGGAAAGAAAGCAAAAGGGAAAATGTCG

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210432 lncRNA upstream 1673 327423 ~ 329164 (+) True G155229
TU210434 lncRNA upstream 41872 288741 ~ 288965 (+) True G155230
TU210419 lncRNA upstream 118783 211852 ~ 212054 (+) True G155217
TU210363 lncRNA upstream 284039 46589 ~ 46798 (+) True G155189
XR_454944.3 lncRNA upstream 312614 4453 ~ 18223 (+) True LOC103036280
TU210440 lncRNA downstream 13689 344963 ~ 360697 (+) False G155233
TU210439 lncRNA downstream 13744 345018 ~ 350247 (+) False G155233
TU210443 lncRNA downstream 13744 345018 ~ 350247 (+) False G155233
TU210444 lncRNA downstream 13744 345018 ~ 350247 (+) True G155233
TU210470 lncRNA downstream 64491 395765 ~ 399614 (+) True G155250
XM_022679438.1 mRNA downstream 90254 421528 ~ 537878 (+) True LOC103033531
XM_007251567.3 mRNA downstream 220655 551929 ~ 563776 (+) True LOC103040340
XM_007251642.2 mRNA downstream 347721 678995 ~ 681903 (+) True LOC103034482
XM_007251569.3 mRNA downstream 373081 704355 ~ 713021 (+) True blvrb
XM_007251568.3 mRNA downstream 382635 713909 ~ 718705 (+) True sertad3
TU210384 other upstream 177574 149347 ~ 153263 (+) True G155206
TU210867 other downstream 872467 1203741 ~ 1214663 (+) False LOC103036073
TU210855 other downstream 934546 1265820 ~ 1269379 (+) False G155491
TU210857 other downstream 934546 1265820 ~ 1268195 (+) False G155491
TU210859 other downstream 934546 1265820 ~ 1268195 (+) False G155491
TU211262 other downstream 2407087 2738361 ~ 2755112 (+) True G155776

Expression Profile