RNA id: TU210550


Basic Information

Item Value
RNA id TU210550
length 2324
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G155283
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 587842 ~ 590204 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGctcttactaagaaaatgttTATTCTCTGTTCATGCAGCGCCGTCATTCTGCAgaagtggaggagaacaaaagtgtacacacattttacacacagcaAACAGACCGCAGTTCACTCACTAGTCTGACATGAGGAAGACCAGGGCTTAACAGAGATGCCTGAGTTTATCATTACCTGGATAAtgtaagcaaacacacacacacacacacacacacacacacacacacacacacacacactcacactcactcactttagGCCACATCCAGGTGTCAGAATATTTTTGAAAACATAGTTTTTCTCTCAGTTTCCAACTGTATTATTGGAAAATACGAATTACACCAAAAAATGCTCATTAGTGCACATTCtaacaaaaaaactaatctaAACTTTAACATAGTTTCTAttctattaaaaacaataaaaactaaaattgttTAGCAAgaatatcataaataaaatgctaaaaacattTCTAGCAAAAAAGATtttctaaaaaatgtaattatattagtGTGTTGCAAACAGCAGGTCTTTGTAACTCAATATCTCACAGAGATTCAAAATCTGATTTCCATCAACTTAAAGTTTCAGAAgtgaacaaaataatatatatatatatatatatatatatatatatatatatatacataacttACTGTTGTGTTATGTTGCTATTTCTAAAACCTCCACATACTTCTGGTTTAGAGTGTATGACCAAATCTGGTTAAAGCATCTTCCTCTCTCTATAGGTGGGTATAATGACCCCCGTCTACCTGATCACTAAGCACTGATGCCAGGCAGTGTAGGAGTCTGTTAGATGACATAACAGTATTAGAGGTTAgcattctcctccaagcgtgttgagctcCACTGATGTTAGAGgcagtttgaaaagatgtgGTGGAGCTTCACTCCTTGAAGGAAGACCATGCCAGCTCTATTACACTCCAGGCACTGTTAGCATAGTGTGATAAAGGTCATTCGCATTGGTTATGACCAGACTGGTAAAAAAAACCTTGGGGGTAGTTTAAGAAACAGtgagaaaacatttattaaaaaaaaagtgttcagttcccagtaaagaaaataaatgtttggtgTGGACAGAAGAGCACAAGACTGAGAAAACTATGTTTTCAAAGATATCCACGAGTGGACAAGGCCTTCGTTTCACACAATGTGACATTTTTGTTCATGTGGTGCAAACAAGGACAAGACGGATATGACAGATTGGTCCCTGCAAAACACTTTAAACAGGATACACAGGCTGTCAcagttattttagtcatttcctGTCTTTTCCCATCCCACCAAAATGTGACAGGGGTACCAACGCTATGGGTCACTCTGTTTAGAACCACATAGAGCGCacttcacacaccacacaccctcCATACACAGATCATCTTCCCTTTATTTGTGAACAGACCGTTTAAAGTTTCCCAGATGAAGGTTTTGAACCCAGTAGGCATGCTGGACAATATCATACGTTCAGCCACGCTGTTGTGGTCTACAAAGTGTAAGTCAATGGAAGAACcgctaaataaaaacaaaaaacaggttAATAGTataaaaagagcaaaagaaGTGAGAAACAGACAAACATGCTCCTCCGAAGGATAAAATAACAAATCTCCAAGAAAGATTTTGGCATATTTCCATTCTCTTCAGCATTAGATCGGATAAGGTTAGATGTGGAGACGCACAATATACAAATAGACGGTTTACACATATAGGATTCGTCTTTCAAcaggttaaaaaataaatatcattagCTACTTCGTTGTAACATCTCTCAGAACCACTTTgcgtttattttaatttacctCTCCCCACTGCTCTTTGGCCCAAACGCTGGCTACCGAGTGTCATTTCCTCCAGCAGCCACCGGGGGGCGCTCAGTGCCTGGTCGAGTTTGTTCTCCGGCGACGAGGCGGCGAGACggagacgtgtgtgtgtgtgtgttttctccgTGCGGTCAGTGCAGTCCCGTCGCACCAGGCCACCTGATCTCAAATCAGGTCCTCTTTTTCCTGTCTCAGTATAGAACACTACACGCTTAGAGGTTTAGAGGGCGCTGTGGAGCACGCGCTCATTTCTTCTTTCCGGTTTTCTTCTCCGGTTTCTCGCCCTTGTCCGAGCGCTCAGAGCCCCGGTCGGCCCGGTCCGACCGCTCGCCCCTCTCTGAGCCGCCGGCCCTGCTGCCGTCCCGCCGTGTGCCCTCGTCGGTGGATGAGGTAGTAGGATGATGAGGCTGCCCCCACTTGGACATCTCCTCGTGTTCAGTAATGctcactgtgatgctgctcgtcCAACCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210557 lncRNA upstream 90702 493411 ~ 497140 (+) True G155290
TU210470 lncRNA upstream 188228 395765 ~ 399614 (+) True G155250
TU210471 lncRNA upstream 188228 395765 ~ 399614 (+) False G155250
TU210467 lncRNA upstream 188228 398076 ~ 399614 (+) False G155250
TU210468 lncRNA upstream 188228 398076 ~ 399614 (+) False G155250
TU210572 lncRNA downstream 1470 591674 ~ 593996 (+) True G155300
TU210608 lncRNA downstream 105322 695526 ~ 703112 (+) True G155328
TU210615 lncRNA downstream 130091 720295 ~ 724186 (+) True G155332
TU210621 lncRNA downstream 158630 748834 ~ 749156 (+) True G155336
TU210650 lncRNA downstream 224549 814753 ~ 816758 (+) True G155357
XM_007251567.3 mRNA upstream 24066 551929 ~ 563776 (+) True LOC103040340
XM_022679438.1 mRNA upstream 49964 421528 ~ 537878 (+) True LOC103033531
XM_007251642.2 mRNA downstream 88791 678995 ~ 681903 (+) True LOC103034482
XM_007251569.3 mRNA downstream 114151 704355 ~ 713021 (+) True blvrb
XM_007251568.3 mRNA downstream 123705 713909 ~ 718705 (+) True sertad3
XM_022679465.1 mRNA downstream 337515 927719 ~ 952480 (+) True daw1
XM_007251581.3 mRNA downstream 513246 1103450 ~ 1106792 (+) True LOC103044527
TU210384 other upstream 434579 149347 ~ 153263 (+) True G155206
TU210867 other downstream 613537 1203741 ~ 1214663 (+) False LOC103036073
TU210855 other downstream 675616 1265820 ~ 1269379 (+) False G155491
TU210857 other downstream 675616 1265820 ~ 1268195 (+) False G155491
TU210859 other downstream 675616 1265820 ~ 1268195 (+) False G155491
TU211262 other downstream 2148157 2738361 ~ 2755112 (+) True G155776

Expression Profile