RNA id: TU210557


Basic Information

Item Value
RNA id TU210557
length 357
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G155290
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 493411 ~ 497140 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgtggccactttattagaaacacctacctatacaaccttgttcttccactcactgtggccactttattagaaacacctacctaccaaccttgtgtttccactcactgtggccactttattagaaacacatatatgctaaccttgtgcttccactcactgtggccactttattagaaacacctacttaccaaccttgtacttccacccactgtggccactttattgtaAACTCTGATCGTGATTATGGGATGCAGTGCAGTGGTGAAGCTGTGTGATGCTCTAGTCCTGCTGGTTTAAACACTGCTCTGCTGAGTTGCGTCTGTGCTTCAGGGATGCCTGCTGAGCTGCCCTGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210470 lncRNA upstream 93797 395765 ~ 399614 (+) True G155250
TU210471 lncRNA upstream 93797 395765 ~ 399614 (+) False G155250
TU210467 lncRNA upstream 93797 398076 ~ 399614 (+) False G155250
TU210468 lncRNA upstream 93797 398076 ~ 399614 (+) False G155250
TU210440 lncRNA upstream 132714 344963 ~ 360697 (+) False G155233
TU210550 lncRNA downstream 90702 587842 ~ 590204 (+) True G155283
TU210572 lncRNA downstream 94534 591674 ~ 593996 (+) True G155300
TU210608 lncRNA downstream 198386 695526 ~ 703112 (+) True G155328
TU210615 lncRNA downstream 223155 720295 ~ 724186 (+) True G155332
TU210621 lncRNA downstream 251694 748834 ~ 749156 (+) True G155336
XM_007251567.3 mRNA downstream 54789 551929 ~ 563776 (+) True LOC103040340
XM_007251642.2 mRNA downstream 181855 678995 ~ 681903 (+) True LOC103034482
XM_007251569.3 mRNA downstream 207215 704355 ~ 713021 (+) True blvrb
XM_007251568.3 mRNA downstream 216769 713909 ~ 718705 (+) True sertad3
XM_022679465.1 mRNA downstream 430579 927719 ~ 952480 (+) True daw1
TU210384 other upstream 340148 149347 ~ 153263 (+) True G155206
TU210867 other downstream 706601 1203741 ~ 1214663 (+) False LOC103036073
TU210855 other downstream 768680 1265820 ~ 1269379 (+) False G155491
TU210857 other downstream 768680 1265820 ~ 1268195 (+) False G155491
TU210859 other downstream 768680 1265820 ~ 1268195 (+) False G155491
TU211262 other downstream 2241221 2738361 ~ 2755112 (+) True G155776

Expression Profile