RNA id: TU210650


Basic Information

Item Value
RNA id TU210650
length 1139
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G155357
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 814753 ~ 816758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

catttccactcgctgttgtgtttacgtgaatCTCAGTGGAAATGTGAACTctaagtgtaattacggtgcgtatctgtggacaaatagctattttattgtaCACAAGGAGacgaccacagagttcagagaaagacagtagataattcagcctgtagttttctcagaggacgtctgagaaaaacacagaaattgtCATTCgcgacaggaataaaatcatagaggacccccataaaagagaacatTTTGGGAGACTGATCAATGGCCTTTACTCCTTTCACTCTCTGCCCTATTTAAActttcacttcctctctacctgcgtgTCAAACAAGTTTGCAACCACTTCCttcccatcttcctccttctttccaTGCCAGTCTAAGGGTGTGAGAAATACTAGcaaaaagatttttatttacagaatctttCACTAACGGATGTTCAGCCCAGCGTGTATTACATGATTTAGCAAATTCATTTTTCAGATGTTTGTAGGTACAGACATACATTTTGAGCACTCTGGGCACTCTGTTTGTCTCAAAATAAGACTTATATCAGATTGgcctaaatgttttaatatactgCCCAGCCCTACTCCGAAACACTTACACCTGTACAAATCAATACGTAAAAATAAGTGCCAGTTCTGAGGGTGGATCAGAAGTGTTTTTACTCTATAAATATTCTATAAACTCAATATAATCTATATAGAATCTGTTCTCAAACTTTTGATGGGCAGTgtgaataaacacacatatgTATTCACATACAGAATTGTGTGTTCAGGCTTGGTCAGTGTTCTGGCTCTCCTCCATCACCTCTCATCAGGGCAGTTTAGGATGGAGGCTGCTTCATCATGGTGGAATAATGGTGGATATGGAGGGACGCCCGCAGCCCGCTGACCTCAACCAGCTCCATCCATTCAGCCAGCACTGCAGACCCCTGATAACCTGACATCCTCCTCCTGACCCGTGAGCTTCCTACCATGGAAGTGCCCCAGTCTCAGACACACCCTGGCATCCGGCATGTTCCACAGTGCCAACAGGAGCTGCTAGCATCTGAGCAAAGGGAAAGATTACCTGGAAGAGATCAGATACAGGCTATAAATTACATACTGGGATTAATTAACACTTACAATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210621 lncRNA upstream 65597 748834 ~ 749156 (+) True G155336
TU210615 lncRNA upstream 90567 720295 ~ 724186 (+) True G155332
TU210608 lncRNA upstream 111641 695526 ~ 703112 (+) True G155328
TU210572 lncRNA upstream 220757 591674 ~ 593996 (+) True G155300
TU210550 lncRNA upstream 224549 587842 ~ 590204 (+) True G155283
TU210777 lncRNA downstream 97638 914396 ~ 916240 (+) True G155436
TU210803 lncRNA downstream 198484 1015242 ~ 1034453 (+) True G155457
TU210822 lncRNA downstream 288800 1105558 ~ 1106359 (+) False LOC103044527
TU210799 lncRNA downstream 291740 1108498 ~ 1113600 (+) True G155455
TU210829 lncRNA downstream 323216 1139974 ~ 1148922 (+) True G155478
XM_007251568.3 mRNA upstream 96048 713909 ~ 718705 (+) True sertad3
XM_007251569.3 mRNA upstream 101732 704355 ~ 713021 (+) True blvrb
XM_007251642.2 mRNA upstream 132850 678995 ~ 681903 (+) True LOC103034482
XM_007251567.3 mRNA upstream 250977 551929 ~ 563776 (+) True LOC103040340
XM_022679438.1 mRNA upstream 276875 421528 ~ 537878 (+) True LOC103033531
XM_022679465.1 mRNA downstream 110961 927719 ~ 952480 (+) True daw1
XM_007251581.3 mRNA downstream 286692 1103450 ~ 1106792 (+) True LOC103044527
XM_015606424.2 mRNA downstream 286693 1103451 ~ 1106792 (+) False LOC103044527
XM_022679957.1 mRNA downstream 387145 1203903 ~ 1223350 (+) True LOC103036073
XM_022679466.1 mRNA downstream 598649 1415407 ~ 1457526 (+) True LOC103025301
TU210384 other upstream 661490 149347 ~ 153263 (+) True G155206
TU210867 other downstream 386983 1203741 ~ 1214663 (+) False LOC103036073
TU210855 other downstream 449062 1265820 ~ 1269379 (+) False G155491
TU210857 other downstream 449062 1265820 ~ 1268195 (+) False G155491
TU210859 other downstream 449062 1265820 ~ 1268195 (+) False G155491
TU211262 other downstream 1921603 2738361 ~ 2755112 (+) True G155776

Expression Profile