RNA id: XM_007251581.3


Basic Information

Item Value
RNA id XM_007251581.3
length 2179
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC103044527
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1103450 ~ 1106792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAGAAGAAGGTCCCGCTGTGTTTATAAAGAACCCGGAGCTGTTCTGATTAAAGGTACTGCTGATTTTGGACAGAGTCTTCTCTACTTCCAAAACTCATCACAAAACTCCATCAAGAGGACTTTGTCAGACTGTTAAAATTGAGAGATTGAAAGTGAGAACATGATGTCAGAAATATCAAGTAATGAGAAAACATCACCTGCTGCCGACCACATTCCCCCATGCCTCAGAcaaacaacagaacaaaaaaatacaggcaAAAAGAAATCTCACAATTGCAAcgagtgtggaaagagttttacccTGTTGTGTAATTTCagaacacaccagcgcattcacactggagagaaactgtATCAGTGTTCAGAATGTGAACAGAGTTTTACTAACAGTAGTAATCTACGAAGACACCAGCGGATTCACACAGGACTAAAACCTCATCACTCATAaggcatcagcgcattcacactggagagaaaccgtattactgttcaGAATGTGGACAGAGTTTTAGAGAGAGTGGTCCCCTTCAaatgcatcagcgcattcacactggagagaagccTTATCAGTGCTCAGAATGTGGACAGAGTTTTAGAGGGAGTGGTACACTAAAATTACACCAGAGCGTTCATACTGGAGATAAACCATATAACTGCACAGAGTGTGGGAAAAGTTTTACAATGAAGAGTCATCTacaaacacaccagcgcattcacactggcgagaaaccgtatcagtgctcagagtgtgggaagagttttatacAGCTGACTAATCCCCagacacaccagcgcattcacactggagagaaaccgtatcactgctcagagtgcgATAAGACTTTTAAAAGTGGTAGTGCCCTCAAATTACACCAGcatattcacactggagagaaaccttatcagtgctcagagtgtggacAGAGTTTTGGAAGGAGTGGTACACTCgcaacacaccagcgcattcacacaggagagaaaccatattactgTTCAGAGTGTCGGCAGAGTTTTAGAAGGAGCGGAACACTCAAattacaccagcgcattcacactggagagaaaccgtatcactgttcagtgTGTGGGAAGACTTTTAATGTCAACTGTAATTTTCAAAAACACCAGCTGATTCACACAAGAGGGACTTGAATCACTGCTGAGACTGTGGAAACAGTttcagggtgttttcacaccagcactgtttagTTCAGTTAAAACAGACTGATTCCTTTGAACTCTTGGTGCAGTTAGtttcagcaggtgtgaaaacaataATCTCAATCAGgtacagaacaaaacaacagcacCCGCAAGAAGAAGTGGTCTGTTTCcggtcccaaacaaactccGAAGCAATTCACAAATTTTGTGCATTCAGTTTGAAGGTACTTCACACTGCAAAACTATACGCGCTGTTTtggaacacagaaccttcttgctgtatttactttcctgCTCTCACACCAGACAGCCCTGGCCAATCAGAAGAGACAGAGTGCTTGCATGGTTTGTTGGGGCACATTTTGGTACGTGTTGgttttgcctgtgtgaaaacaaaccaaaccaagtgaGAAAACACTCACAGTAAAACTGTCCCTTTAAATCTTGTATTCACAACAACTGTAGATCATCTGATGCTGGTTATGGTAACATGAAATATTTTCTCTAAGGaaagtaatttaatttcatttaacatACTGTCACCTTCctatttgtttacttttttttttccttttgcaaaataaacttttttttgcctAATGTATCCACACATGATGCTGCATGGCCACCtgtggtaaaatctaagaataACTTATGTCAAAATTGTGATTTAAGCCAATTTATTAtgcataaacaaaaataaaatgtgacttATTAGCTTCCTTCACTGAATTAGTTTTTATGATTTAGAGCTCGTCCCAAATTGATGAGATATttactataatataaagtttacttcttattaataaaggcCATAAATATTGTTTAGTTGTTTAGTCTTACTATCTGTCTTTTTAGTGAAATCAAAAATGATTGCTTTTTAAATGGggataaataaagctaaatggcTTAATATACAAACTACTAGTATGGgttattcttttaattaaaaagtaatatacaatttacatttacatttctatTCATTCATCTCCTACCTGTTTCTGGTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210803 lncRNA upstream 68997 1015242 ~ 1034453 (+) True G155457
TU210777 lncRNA upstream 187210 914396 ~ 916240 (+) True G155436
TU210650 lncRNA upstream 286692 814753 ~ 816758 (+) True G155357
TU210621 lncRNA upstream 354294 748834 ~ 749156 (+) True G155336
TU210615 lncRNA upstream 379264 720295 ~ 724186 (+) True G155332
TU210799 lncRNA downstream 1706 1108498 ~ 1113600 (+) True G155455
TU210829 lncRNA downstream 33182 1139974 ~ 1148922 (+) True G155478
TU210834 lncRNA downstream 42416 1149208 ~ 1236789 (+) True G155483
TU210841 lncRNA downstream 53717 1160509 ~ 1168023 (+) True G155487
TU210852 lncRNA downstream 80354 1187146 ~ 1269379 (+) False G155491
XM_022679465.1 mRNA upstream 150970 927719 ~ 952480 (+) True daw1
XM_007251568.3 mRNA upstream 384745 713909 ~ 718705 (+) True sertad3
XM_007251569.3 mRNA upstream 390429 704355 ~ 713021 (+) True blvrb
XM_007251642.2 mRNA upstream 421547 678995 ~ 681903 (+) True LOC103034482
XM_007251567.3 mRNA upstream 539674 551929 ~ 563776 (+) True LOC103040340
XM_022679957.1 mRNA downstream 97111 1203903 ~ 1223350 (+) True LOC103036073
XM_022679466.1 mRNA downstream 308615 1415407 ~ 1457526 (+) True LOC103025301
XM_022679467.1 mRNA downstream 308615 1415407 ~ 1457526 (+) False LOC103025301
XM_022679468.1 mRNA downstream 308615 1415407 ~ 1457526 (+) False LOC103025301
XM_022679960.1 mRNA downstream 460323 1567115 ~ 1622172 (+) True trip12
TU210384 other upstream 950187 149347 ~ 153263 (+) True G155206
TU210867 other downstream 96949 1203741 ~ 1214663 (+) False LOC103036073
TU210855 other downstream 159028 1265820 ~ 1269379 (+) False G155491
TU210857 other downstream 159028 1265820 ~ 1268195 (+) False G155491
TU210859 other downstream 159028 1265820 ~ 1268195 (+) False G155491
TU211262 other downstream 1631569 2738361 ~ 2755112 (+) True G155776

Expression Profile