RNA id: TU210834


Basic Information

Item Value
RNA id TU210834
length 6138
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G155483
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1149208 ~ 1236789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagaaaaaaacttttaaaggtgccTTCTTGACCTTCCTAGAACTGTAAAACATTAGAACTGACTCATTTGAATACTTGAAAAACTGACTTAGCAAACTTATCAATGGCTTTATAACTTTTTCTGTCAGTTACCTGCTTCGACATAGTGTAAATCAAGCGATCAACTGGCTTAACTATGCGACCCACACGTGACCTAACCTCATGTACAGAACTTGAACTAACAGTTTGTGTTGGAGGTTCACTAGTGCGTGCATGTACATGGTTTTCAGATGTGGCTAAATCAGATCTGGTGTCATCACTGAGCTGGTCTACATTTTCTGAGTGAAAAGTCTGTCCTGTGTGTGCCTGACTTGGGACTGGGGACTGTACAGTTTGTGGGGCTTCAACATTTTCAATGCTGCTCACATTATCCTCACTACAAGGCAAACTAGATACCCAGTCTTGAATTCTTGTGCACGTTTCTTCAGAAATGTCTGTTCTGGGCAGACTTTCATCCACGTCAGAGATGTCATGTGACACACTTGATTGGGATTCAGCAAAGGAGGCATCTGACACTGCATCCATGTCCAAGGGAAGAAAATTTGCAAGCATCAGCAAGTTACGATGAACAACTCTGTCCTGACCTGTTACAGGATTATGGATTCTGTATGTGTGAGTTGACTCGTTCACACCGACAACAGTGTAGACTGTGGACTCCCATCTGTCTGCAGTTTTTcgctttcctctctctctcttatttgcGACCAAAACTCTGTCACCAACTGTGATTTGTGAACCCTTCACACGACGGTTGTAGATCTGCTCTTGACGACGCTGTTCTTTGTCAGCATGTTGTTGAGCTACCAGCATTGCGTCTTTAAGGTCTTTTGTCAGAGACTTGACGTAAGGATCATAACTGCCAATCTCAGGGTCTTTCAAGATGTTTTTGAACATCAAATCAATGGGAAGGCGTGGAACCCTACCGAACATCAAGAAGAAAGGAGGGTAGCCTGTTGTCTCGTGCACTGTGCAGTTGTACATGAACGTCAAAGTTTGCAGCTGTTGTGGCCAATTTCTCTTAGCGTCAGGGGTAAGAGCGCGAATCATATTTCCCAAGGTTCTATTAAACCGTTCAACACTGCCATTACCCATTGGGTGGTAAGGAGTTGTGTGGGACTTTCTGACTCCAGCGATCTTAAGCAACTCACTGATCAACTGACTCTCAAATGAAGCTCCTTGGTCAGAATGAATTCTCTCTGGGAATCCATATATACAGAAATACTTGTCCCATAACTGCTTAGCTACCTGCTTTGCAGATTGGTCTTTACATGGAAATGAGTGCGATAACCTGGTAAAATGGTCTGTGACCACAAGTACATCAACAGACCTATTGTTGCGGTCTTCCGCACACCAGAAATCAATGCATACGATCTCAAGAGGTGACGTAGTTTTGATACTCTCTAACGGGGCTCTACCCTCAGGATCAGCAGATTTACCAATGACGCATCTAGGACAGTGTCTGACATATTCACGCACATCCCTGTCAATATGGGGCCAAAAGAATCTCTGACGAGCTATTGCTAAGGTCCTAAATTGCCCTTGATGCCCTGCACAGTCATGGACGCCTTTTAAGACTTCTTGTTTGAAAGAGTCAGGGACAATAAATTGGTGTCTTTTCTTCTTTGAGATTTGATCTTTGCATACTCGATACAGAATGCCACTGCAAGTGACCAATTTATCCCAGTGTTTTAAGTACCTTAGAACCATTAAAGACTCTCTGGCCTTTTCTCGTCTTGATGGTCTCCGTCCTCTGACCACATAGTTCAGCACTCTCGACAACACAGGATCTGTCATTTGGGCCTCACgcagctctctctctgaatAAGGGATGATATCAGCATCAGATGAAATCATCTGGGGTAAGTGATCCAACACGTCTGTAGCACGCACTCTAGCTCCAGAGTCCCATACACTGTGTGTCTCTAGAATAGCCGACACTTCCTCTCTAGAAAGAGAATGATTCTTGTGGCACACTGGTGCACACGTTTTCTGTCCCAAACTTGTGAAATGATCTGTAGGGCAGCTTGAACACCTGAAAGCATTCTGAACTGAATCGTTAGAGACAGGAACAGTTTCTCTAAGCAGTTCATCATAGGAGTCTTTCAAGATCCGCTTGCCGATGGTCTGTTTAACAAATGGCTTGCGACTGAGTGCATCTGCAACAATGTTTCTAGGGCCAGGAATGTACTTGATATCAAACTCATATGAAGCCAACTTTGCAACCCATCTCTGTTCACATGAATCAAGTTTAGGTTTGGTCATGATATGGGTAAGCGGGTTGTTGTCCGTCCACACTGTGAATACATGACCTTTCAACCAGTGGCTAAATTTGTCGCACACAGCCCACTTTAGCGCAAGAAACTCGAGACGATGTGCAGGATATTTCTTCTGAGCACGTGTGAGTGATTTGCTCGCAAAAGCAATGGGTCTGGCTCTACTTTGGCCTTCTTGAACTTGTGAGAGAACAGCACCTAAACCATCTAGCGAAGCGTCTGTGGACAGAATAAAGGGTCTAGTAAAATCAGGATGCGCTAACACGACACAGGTCAGCAAAGAGGACTTAAGTGCATCGAATGCTTGTTGATGAGCTGATGTCCAGTCACTTGGAGACAACTTTCGGTGCTGGGTGCGAACTTTTGCACAGGGTCTACCCCTACGCTTTTGCTTCTGGCCTGCTACCAACTCAAACAGAGGCTTTGCAGTGGCTGAATAACTTGGTATGAAGTGTTGATAGAAGTTAACCATGCCCAGAAATGATCTAATACGAGATGGAGAGGGAGTGACACCGTCTTGCTCCATTAAGTCTTTGGTGCACATCTGGCTGATAGCATCTACCTTGCTGGAGTCTGTAGACACTCCTGATTCATCCACAATATGGCCAAGAAACTTAACTGACCGCCTGAGGAACCAACACTTTTTAGGTGCTAACTTCAGGTTGTGCAAACGCAAGCGACTGAAAACTAGCTCTAAGCGTTCTAAAGCCAGTGCTTCTGTTGGTGCGTACACCAAAAGATCATCAAGGTAGCACAAGAGACTTAGGAAATTCTGGTCACCGAATATGCTCGTCATCATTCTCATGAAGCTGCCAGGACTATTAGAAAGACCTTGCGGAAGTCTGTTATATTCATATAGCCCTATCGGTGTCGTGAATGCAGAGTACTTTCGGTCATCCTCATGGAGAGGCATGTTGTAAAAACCAGATGTCAGATCCATTGTACTGAACAGTGCATTTCCTCCAAGAGCGGCCAGGCAATCAGCCTGATGAGGCAGTGGATGTGCATCTTTCAGTGTCCGCTTGTTTAGCCATCTGAAGTCAGTGCACACTCTTAAGTCGCCATTCTTTTTCCAGACAAGAACAAGTGGCGAGGCATACTCACTGGTAGACTTTCTGATTATTTCCCTCTCTTCCATCTCATCCAAGACACGTTTTAGCTTCTGATACTCAGCAGGAGGCACCCTGCGAAATGGTAGCCGAAATGGCTTGTCGTCAACAAGGTGGATTCTGTGGACAAACCCTTTGGCTTCACCACAGTCAAGATGATGACGAGAGAAAATGTCCTCATACTTGAGAACTAAGTCTGCTAGTTTGTCTTTCCATGTTTCAGAAACATCACACGACTCTAAATCAAGATCGCTCAGGCCCGCAAGCTTCAGTTTTTCTTTCACATCTGCTGTGTTACTCTCATGGGATCTGGAAATGTCAGAGCCTTTGGGAACATTCTGACCATGGCTAGTAATCTGGACTTTGCTACACAGTGATTCTGGACGTTTCATGTCTTCAAGAGCTAAACATGTGAAAACATCTGCAAGTTTGGCATTTCTCCTTATAGTAATAGGATTGGAAGATGCATTCAGCACTTTTAATGGGATCCATTTATCTCCCCATAAAGGTGTCACAACCCGGGCAACCATCAAACCTCTGGGAGCAGCACGTGAGGAGGTGGGTTCCACGATAACAGTACTGCCAGGCGATACTACAGTTTTTCCAGGTAGCTTAGCCCACAACAGATATTCAGTACCAGCATCTAAAGTGACAGCTGTGTTGCATTTTGCTGTACCAACTTTGTCAGGAGCGTCACCACTGGTCCAGCGACTAAGACCAGCAAGAAGAGACAAGAACTGCTCAGATTCATGACAGTCTGAGGTGGGAGTAGAAATCACCTTCCAGTAGTGACTGTTTTGTTTCAGATGACTAAGAACATGCTTAATAACATTAGTGCCAATAATTAGATCATCTGATTGATTTTGGACTACAAGAGCAGGAACAGAAATATTGCAGCCATAAATCTCCATGGTGAGCTCTATTGTAGACTTTGGCTTCACACGGCTACCTCCACATCCAATGAGTATTACATCAGTGTCTGACCGACTTGTTTCAGTCACGGCTCCAGCTTCAACAAGCTTCAGTTCTGCTGCTTCACTGAGCGTACACGCCATGGATCCGCTGTCTAGCATAGCTTTGAGTGGCACTTTGTTTTCGACCATTACTGAAGTATAAAACAGACTGTCACTGCTCCTAATCTTTTGTGTGTTCTGAAAAACAGTTTGTTCTGATCCATCTTGAGCATCAAATTCATATTGGGAGTGTTCCATCTGACCTGGGCATCCTCCCTCCATACACAGGTCTGTTAGTTTTCCTGCACATTGCTCTGCTGGGACAGTTTGGCTGTACATGAGCTTTTAGTGTGGCCTGGAGAGAAACAGCGAAAACATAACTTCGCTGAGAAACAGTGCGATTTAGTACTATGACCGTTCTCACCGCACACGCTGCAAGTTGTGATGTTGCGCCAGCTCCTTCTTCTACCCTCATGATGGTTAGATGTCACTGCATTCTTTTTCTGGACTTTTTCCAAGACCTGTTCAAGCATTGTCATCATGCGACTTAACATGGCATCACTCTGACTGGCATGTTGTTGGGACATCACAATTGTTTCGCTAGTGTTAGGGACATTATTGCTGCATTTGGACACTGTCTGTCCATTTACAGTCACATCACTGTCTTTCACATGAGCAGCAGTTGCATTGTGTCGTAAATGTACAGCACCTGATGCACTAGTCATAGATCTCTTTTCACGCTGGTATTCATCAATTCTTTCTTGAATCTGTTTTGCACTCCACTCGTGAATCGGCTTGCATTTGAACACATAAGCTAACTCAGGGTCTGGACAGTGCTTAACAAACATTCTGGTTACCTCCTCTGTCATGTTTTCCATGTGTCTGCCTTGACGACGAAGGCCCTCATCAGCGAGGTCTGCTGCTTTGTTGACACGTATCCAGTAATCAACAGGATTTTCTTTGTGTCTTGGAAGTGTAGAATAAAAGTCTGCAAGTGGCAGGCATGACGATGTCTTACTAAAATACTGCAGCAGTATGTTGTAGATTGCATCTGGATTTTCTCTGGCATTAAGTGTGGGATCGCTTCTCAAGCCTATTCGAACTACATCTCTAGCCCTACCCATCAACCTACAGAGTACTTCATCTGACTGTTCAGCTATTGTGTAATTCTGTTTTCTGACATAGGACTTCATCATGTCAATCCACTCTGTAACTGAGCATTTGTCTGAATCATCACCCCGGAAAATGACTGGTTCCCTATTAGGACTGACACTCACATTTATAAATGGCGTTTCACCACCACTAGGTCTGTCTTGCTGTACAGTGCATTGGTTCGTATTGCAATTTACTGAACCCTGTGAAGCTAGTTTTTCAATGATAGCATCACCAATCTGTGAACCCATTTGACTAATCATTTCACTCAGCTGTTGTACTGGATTTACATGAGCAAAAGGTGTAGAGTGACTTGGCCCACCCTGTGCAAACTGCCCCACAGTAGATTCAACTGAATCCTGACCCAACCCTGAATCACCATTACTCTCAGTTAGCACAGAAGTACCtaaatatttctcattaaatttaGGTGTCACAGGCACAGACATAAAACCTCTACCCCTTCCAAAACTCAAATTGTGATCCATATCAACAGAATACATAGACTTACTTGCAATTTTAGCTCTGAATTCAGTAAACGTTAAAACTTACACAAATcaggtgaaagagagaaaaaaacaaaaaaaaatgcacacttTAATAACGATTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210829 lncRNA upstream 286 1139974 ~ 1148922 (+) True G155478
TU210799 lncRNA upstream 35608 1108498 ~ 1113600 (+) True G155455
TU210822 lncRNA upstream 42849 1105558 ~ 1106359 (+) False LOC103044527
TU210803 lncRNA upstream 114755 1015242 ~ 1034453 (+) True G155457
TU210777 lncRNA upstream 232968 914396 ~ 916240 (+) True G155436
TU210876 lncRNA downstream 13195 1249984 ~ 1338723 (+) True G155507
TU210884 lncRNA downstream 25264 1262053 ~ 1263683 (+) True G155514
TU210851 lncRNA downstream 29031 1265820 ~ 1278262 (+) True G155491
TU210860 lncRNA downstream 29031 1265820 ~ 1268195 (+) False G155491
TU210847 lncRNA downstream 60506 1297295 ~ 1346004 (+) True G155490
XM_007251581.3 mRNA upstream 42416 1103450 ~ 1106792 (+) True LOC103044527
XM_015606424.2 mRNA upstream 42416 1103451 ~ 1106792 (+) False LOC103044527
XM_022679465.1 mRNA upstream 196728 927719 ~ 952480 (+) True daw1
XM_007251568.3 mRNA upstream 430503 713909 ~ 718705 (+) True sertad3
XM_007251569.3 mRNA upstream 436187 704355 ~ 713021 (+) True blvrb
XM_022679466.1 mRNA downstream 178618 1415407 ~ 1457526 (+) True LOC103025301
XM_022679467.1 mRNA downstream 178618 1415407 ~ 1457526 (+) False LOC103025301
XM_022679468.1 mRNA downstream 178618 1415407 ~ 1457526 (+) False LOC103025301
XM_022679960.1 mRNA downstream 330326 1567115 ~ 1622172 (+) True trip12
XM_022679961.1 mRNA downstream 415865 1652654 ~ 1658962 (+) True LOC103036673
TU210384 other upstream 995945 149347 ~ 153263 (+) True G155206
TU210855 other downstream 29031 1265820 ~ 1269379 (+) False G155491
TU210857 other downstream 29031 1265820 ~ 1268195 (+) False G155491
TU210859 other downstream 29031 1265820 ~ 1268195 (+) False G155491
TU211262 other downstream 1501572 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3920365 5157154 ~ 5157400 (+) True G156188

Expression Profile