RNA id: TU210847


Basic Information

Item Value
RNA id TU210847
length 937
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G155490
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1297295 ~ 1346004 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagagagagatattggtTTTCAATCCATATCCACTATTCctagtatttgcttatttaggagtattttatcctcttaaGTAACTAAGATGCTGTAAAGTATCATTAAAAAATTGTCTTGCAATATATCAAGTATCGTAGGATGacagtatcatgatatcatcGTTCTTGtgcattgttttaatactgtatactgagattccctgtgattcccaccacTAGTCACTGCCAAGTCCAGATATCTAACCTGCTGGATATTTGTCTGGGGCTTACGAGGCATCAGCAATCACTTGGCAAACTCTTCTTCGCATAGCGATTAAACAAGCGCTGAACAATTTTAAGCCTTTGTCGGCTGTAAAAAGAGGCctaaaattgtgtagtgtgaacccaATCTTTCATTAAAGACGAAGGAGCTGAAACAACAAGCTCATGTAGCTGTTGTGTAGCCTCACTAGCTAACACTGCCCAACAGTAAAGTAAAGTCTTACAAGTCTAACATGTCTCTCTTTAAAGGAACAGTTTGGCCCAAAAAGCTAACACAAAACGCTAATAATGAACACAAGTCAAGGGCCACCAATGAACATGCAAATTTTACCATGCTAACTGATGCCCAGTGACTTCTATCAGTTATTAGCCACATGGTAGCATGGTTGCGTGTAGAGGACTGTAGCGCCTGTCCTTCTCCGGCCCCCTGCAGGCTGCCAGTGCGATAGCCGGTGAATGAATTGGCTCACACTTTCTCACACTGTCACACACGTACTTACACACATTACAGTATCCGGACAATTATTAGAGGTGGTGTTGGTATTTTTGAGGTTCTAGATGAACTCCAGAtttgctctcttttttcctcacaTGGAGAAACACAGCTCattattggtgtgtgtgtgtgtgtgtgtgtttgtgtgagaggtgtgtatgtgtgtgtgtgtgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210851 lncRNA upstream 19033 1265820 ~ 1278262 (+) True G155491
TU210852 lncRNA upstream 27916 1187146 ~ 1269379 (+) False G155491
TU210860 lncRNA upstream 29100 1265820 ~ 1268195 (+) False G155491
TU210884 lncRNA upstream 33612 1262053 ~ 1263683 (+) True G155514
TU210836 lncRNA upstream 57922 1228051 ~ 1239373 (+) True G155484
TU210984 lncRNA downstream 11946 1357950 ~ 1361894 (+) True G155573
TU211000 lncRNA downstream 18996 1365000 ~ 1371912 (+) True G155579
XR_002651217.1 lncRNA downstream 33723 1379727 ~ 1383644 (+) True LOC111194749
XR_002651216.1 lncRNA downstream 33723 1379727 ~ 1383041 (+) False LOC111194749
TU211002 lncRNA downstream 35832 1381836 ~ 1382137 (+) True G155581
XM_022679957.1 mRNA upstream 73945 1203903 ~ 1223350 (+) True LOC103036073
XM_007251581.3 mRNA upstream 190503 1103450 ~ 1106792 (+) True LOC103044527
XM_015606424.2 mRNA upstream 190503 1103451 ~ 1106792 (+) False LOC103044527
XM_022679465.1 mRNA upstream 344815 927719 ~ 952480 (+) True daw1
XM_007251568.3 mRNA upstream 578590 713909 ~ 718705 (+) True sertad3
XM_022679466.1 mRNA downstream 69403 1415407 ~ 1457526 (+) True LOC103025301
XM_022679467.1 mRNA downstream 69403 1415407 ~ 1457526 (+) False LOC103025301
XM_022679468.1 mRNA downstream 69403 1415407 ~ 1457526 (+) False LOC103025301
XM_022679960.1 mRNA downstream 221111 1567115 ~ 1622172 (+) True trip12
XM_022679961.1 mRNA downstream 306650 1652654 ~ 1658962 (+) True LOC103036673
TU210855 other upstream 27916 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 29100 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 29100 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 82632 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 1144032 149347 ~ 153263 (+) True G155206
TU211262 other downstream 1392357 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3811150 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 6026372 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 6041498 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 6254563 7600567 ~ 7606668 (+) True G156840

Expression Profile