RNA id: TU210851


Basic Information

Item Value
RNA id TU210851
length 2846
lncRNA type inter_gene
GC content 0.48
exon number 12
gene id G155491
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1187146 ~ 1278262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatatttcatcaAGACAATTTCAGGAAGTGGGTGAACAGAGGGGGAGGAGcgcactgataaaaaaaaaaaaaaaaaaagatctgatgTCCGTTTTATGACGCATCTTGAAAAAAGGCAAGActcaaaaagaaacaaacaaaaaaacgaaaaacaaaatgaaacaaaaacacaaataaaactaaaaacaatctCACTCCAGTGAGCAGTGTGATCTGACGGCAGGCGAAACATAGAACACCaccgttacacacacacacacacacacctgcaacTCACTCACCTCTCCACACTGTCTAACCCACATTAATCACTacacacgagagagagagaaagagagagagagagaaagaaagagagaatgaaagagagaatgaaaaagagagactgCCTGTTAAATAAGGGGACGTTCAAATagtcaaacttaaaaaaatctttttacatcaATCAGTGCCTCCAAACCTGTACAGGTGATCCACAGGAAAGTGAAAGTTTGTACAACACACTGATGATTCTCAATACAGGGTTCTGATGGAGACGGTTCTGGTGAAGAAGGctttgtttctaataaaatgtcgGATGGTTTTGATGGATACGGTTCTGGTGAAGGTTCTGGTGAAGAAGGCTCTATTTCTAATGTCTGATGGTTCTGATGGAGATGGTTCTGGTGTTTCTGGTGAAGAAGGTTCTGGTGAAGAAGGctctgtttctaataaaaagtCTGATGGTTTTGATGGAGACGGTTCTGGTGTTTCTGATTAAGGCTCTGATGAAGTTTGATGAAGGTTACAAGCTGGTGGTGATAAAGGAACTGCAGGTTCTAGTTCTAGTTCTTCCCTTTACACTACTACTGCACCTCCCAAAGGCCCTCCTCCTGTGTGCCCATTTACAGAACCAGCACACACACCtacgtacatacacacacatacatacccaCCCACATAGAGGGACACAACAATCACATTCAGTGTGCTTACTCTCTCGttttcactaacacacacacacacacacagagacatacaCTCTTTATCCTGTATATAACCCCTCCCCCCTCCTTCTTCAGCAGTAagggtgtgtgtgcatgctcgGTTCTCTCACTCCAGCTTCAGGAACAGTAGCACACACTGCCGCTCCGGCGTGAAGAGCACTTATAAAAGTCGCAGATATGGCTTCGTGTGTTTTTATCtttacaaaaccaaaaaaagcaaaaacaaaataaaacctgTAACAATCAGAAGTGTAATGTTCTGCGTTCTCTTCCCCCGCAGGGCGATCCAGACAGCGGCGCAGAGGACTTCAGCACCTCCTGCTGGTTCTGAGGGGTTTAACCTGTTACCATTGCGACGCCTGCGACCGGGGTAATCGCAGCAGCAGGCGCAGAGCAGAGTGTAGTGTGACTGCAGGTAGGAGGACCAATCAGAACGAGTGTGTATGAccgcgtgtgtgtttgtgtgtgttggtgtccGTCTGTTCACCTGCAAAACCCCCCAAAACAAACAGGCCGATATTGCTGGTccaagtgtgtaagtgtgtgtgtgtgtgagagagagagagagagagagagagagtgtatgacAGCATGagattgtgtgagtgtgtgagagtgtgatttgCTGCAGAGGGTGTCCGGTCTGCTGGTCTGGGGGGGGagagagtgcgtgtgtgtgtgtgtgtgtgagagcgcaGGAGGGTGTGTCCATCACTCTCGGACGCTGGCAGAATAAGAGAACTGGGGGAAGTGTGTGCGCGTTTCCGAATCTTCAGCATCCAAACTGTCATACTGGTCAGGAGGTGTAACTGTGATGCTCTGCAGAGTGAACTCTTCGTCAAAGTAACGCGTGTCAGTTTCTGAGGTCACTTGAGGCTTGAATGGAGGGATGAGCTTCTTCTGCAGCACATCCTGCCAGTTAATCAAGGAGAAGAACTTGTGGCTCATCACTTCTTTGGCATCATCAGAGCTTCCTCCCAGCCTCTGTTTGGGGTCTTTCTTGAGCAATCCAGCCAGCAGGGACTTAGCCTCAGGTGAGAGATTCCGAGGGAAACGTATCTCCTCCATTAGGATCAGCTCAAACAGACGCTCATGGTCCTGATTGTAGAAGGGCAGCCGACCACACATCATCTCATACATCACAACGCCCAGACCCCACCAGTCCACAGCACGACCGTAATCATTATCCTCCAGCacCTCTGGAGCCAGGTACTCCGGAGTACCACAGAACGTCTTCATCGTGGCTTCATTGGTGATGCCCTCCTTACACAGGCCGAAATCTGTGATTTTAATATGGCCATCTTTGTCCAGCATTAGATTTTCCAgCTTAAGGTCCCTGTAGACGACGTCTCGGGAGTGCAGGTACTCCAGCGCAGAAACGATCTCAGCTCCGTAAAACCGCGCTCTGTCCTCGGTGAACACGCGCTCTCGTGACAAGTGAAAGAACAGCTCGCCACCATTTGCATACTCCATCACAAAGCAGAGGCGGTCGGATGTCTGGAAGGCATACTTTAGTGTCGTGAGGAAGGGATGCCGCGTGTTCTGCAGAACTCTGCTTTCTGTCACTGTGTGCGCCACCTcgtcCTTGGCAATGATGACCTCCTTGCGCAGGATCTTCATGGCGTAATGCATGCCAGTGGCTTTTTCTCTCACCAGAATGACCTTCCCAAACGTGCCTTTTCCCAGCAGCTTTAGATAGTCAAAGTCATTCATCgtCACTTTGGTGCGTGATTTGGCAATTGCCAATTCCATGCTTTCCAGGCTGTTGTCTCCAGGGGAACCGAAGTTGATGTCCATTGGCTCTTCTTCTTCGCGAGTCTTCAGGCCATTGGCCACTGCCTGAATCGCCCGGATCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210884 lncRNA upstream 2137 1262053 ~ 1263683 (+) True G155514
TU210836 lncRNA upstream 26447 1228051 ~ 1239373 (+) True G155484
TU210834 lncRNA upstream 29031 1149208 ~ 1236789 (+) True G155483
TU210873 lncRNA upstream 42491 1222746 ~ 1223329 (+) False LOC103036073
TU210841 lncRNA upstream 97797 1160509 ~ 1168023 (+) True G155487
TU210847 lncRNA downstream 19033 1297295 ~ 1346004 (+) True G155490
TU210848 lncRNA downstream 19033 1297295 ~ 1346004 (+) False G155490
TU210984 lncRNA downstream 79688 1357950 ~ 1361894 (+) True G155573
TU211000 lncRNA downstream 86738 1365000 ~ 1371912 (+) True G155579
XR_002651217.1 lncRNA downstream 101465 1379727 ~ 1383644 (+) True LOC111194749
XM_022679957.1 mRNA upstream 42470 1203903 ~ 1223350 (+) True LOC103036073
XM_007251581.3 mRNA upstream 159028 1103450 ~ 1106792 (+) True LOC103044527
XM_015606424.2 mRNA upstream 159028 1103451 ~ 1106792 (+) False LOC103044527
XM_022679465.1 mRNA upstream 313340 927719 ~ 952480 (+) True daw1
XM_007251568.3 mRNA upstream 547115 713909 ~ 718705 (+) True sertad3
XM_022679466.1 mRNA downstream 137145 1415407 ~ 1457526 (+) True LOC103025301
XM_022679467.1 mRNA downstream 137145 1415407 ~ 1457526 (+) False LOC103025301
XM_022679468.1 mRNA downstream 137145 1415407 ~ 1457526 (+) False LOC103025301
XM_022679960.1 mRNA downstream 288853 1567115 ~ 1622172 (+) True trip12
XM_022679961.1 mRNA downstream 374392 1652654 ~ 1658962 (+) True LOC103036673
TU210867 other upstream 51157 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 1112557 149347 ~ 153263 (+) True G155206
TU211262 other downstream 1460099 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3878892 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 6094114 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 6109240 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 6322305 7600567 ~ 7606668 (+) True G156840

Expression Profile