RNA id: TU210852


Basic Information

Item Value
RNA id TU210852
length 752
lncRNA type sense_over
GC content 0.50
exon number 3
gene id G155491
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1187146 ~ 1278262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcacAGTTGTGTCCAGAGAAGGCCGGGCTGCAGGTGCAAGTGTAAGTCCAGTGTCCGTCGGCGTCCTGGAGCGGAGTACACACTCCTCCGTTCAGACACGGCCGCCCCTCACACGGGTCCGGTGGGTCGGTGGGAGAGGAGGTCACATCAGGAGTCACTGGGGTCAGAGACACCCCACTCACACTGAGGAAGAGGAGTAGGGGTGGCATCATTTTCATCATCTGTATcatcattaaaaagaaaaacaaaaattactgtattgtatcttttttctctttttccttctcctccGTTTCTtcgctcttcttctcttctcgaTAGGTTCGGCTCCCCAGCAGctggagtgtgagagagagtttgtagcagtgtgtgtgtgtgtgtgtgagagagagagagagtgtatgacAGCATGagattgtgtgagtgtgtgagagtgtgatttgCTGCAGAGGGTGTCCGGTCTGCTGGTCTGGGGGGGGagagagtgcgtgtgtgtgtgtgtgtgtgagagcgcaGGAGGGTGTGTCCATCACTCTCGGACGCTGGCAGAATAAGAGAACTGGGGGAAGTGTGTGCGCGTTTCCGAATCTTCAGCATCCAAACTGTCATCTgcagaaaacagaagaaaaaaaataaaataaacaaaaatacacgCTACAGTATTCCACCAATCAGAACACAGCATCAGTATTAACACAAGGGCCACTTCAAAAGAGGCgggtaaaaaaagtaaaaactgtgTCTGCATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210841 lncRNA upstream 19123 1160509 ~ 1168023 (+) True G155487
TU210829 lncRNA upstream 38224 1139974 ~ 1148922 (+) True G155478
TU210799 lncRNA upstream 73546 1108498 ~ 1113600 (+) True G155455
TU210822 lncRNA upstream 80787 1105558 ~ 1106359 (+) False LOC103044527
TU210803 lncRNA upstream 152693 1015242 ~ 1034453 (+) True G155457
TU210847 lncRNA downstream 27916 1297295 ~ 1346004 (+) True G155490
TU210848 lncRNA downstream 27916 1297295 ~ 1346004 (+) False G155490
TU210984 lncRNA downstream 88571 1357950 ~ 1361894 (+) True G155573
TU211000 lncRNA downstream 95621 1365000 ~ 1371912 (+) True G155579
XR_002651217.1 lncRNA downstream 110348 1379727 ~ 1383644 (+) True LOC111194749
XM_007251581.3 mRNA upstream 80354 1103450 ~ 1106792 (+) True LOC103044527
XM_015606424.2 mRNA upstream 80354 1103451 ~ 1106792 (+) False LOC103044527
XM_022679465.1 mRNA upstream 234666 927719 ~ 952480 (+) True daw1
XM_007251568.3 mRNA upstream 468441 713909 ~ 718705 (+) True sertad3
XM_007251569.3 mRNA upstream 474125 704355 ~ 713021 (+) True blvrb
XM_022679466.1 mRNA downstream 146028 1415407 ~ 1457526 (+) True LOC103025301
XM_022679467.1 mRNA downstream 146028 1415407 ~ 1457526 (+) False LOC103025301
XM_022679468.1 mRNA downstream 146028 1415407 ~ 1457526 (+) False LOC103025301
XM_022679960.1 mRNA downstream 297736 1567115 ~ 1622172 (+) True trip12
XM_022679961.1 mRNA downstream 383275 1652654 ~ 1658962 (+) True LOC103036673
TU210384 other upstream 1033883 149347 ~ 153263 (+) True G155206
TU211262 other downstream 1468982 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3887775 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 6102997 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 6118123 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 6331188 7600567 ~ 7606668 (+) True G156840

Expression Profile