RNA id: TU210876


Basic Information

Item Value
RNA id TU210876
length 2533
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G155507
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1249984 ~ 1338723 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttagcaaaaacaatagggttctacgcaccttcggtgcttgaaccctaaaaaacccactaaatttaaggtgtgtctaaactctTAATTGGTACTGTATGCGTGTGTGGGGTTTTGACCTGAGTATCCTGAATCTTTCTCAGAACTGCAGCGGGACTCCCGCCCATTCGCCTCCTGTTGCATGCGCACTCGCGCTCTGGAGGCCAGCAGAGCGGCGCTGTTGCTCTTGTCCTTGGCGTTCTTGCTGGCAGGGCGACTGGGGCGCTCTCCGATACAACCTGAGTCCAGCGGCATCTTGGGCACTGCAGGCACACAAGGGGAGCTGGGCAGATCCAGAGCTAATCTATGATCCACAATCTATAAGCAATAATCGATATTTTCAACCAATCAGTGCCAGATAACAGCACAGGTCTTCAGGTGTTCAGGTTCCACAAGCATTGTTTGTGTTAcgtatttaaagcatattttactGCCCTGGTGCAGCATCCTGTAGTACTGTCCCATTGTAACTGAAAGTAATTTACAATGCTGGACACAGTGATCTAcaattatagtaaaaaaaaatcggtACCactaatatcattaataatcagtataataaaccctttataaaggtagttttattttaaagtggtacctaaaaATCCAATGAATGTAGTTTACTACAGGACATCACCAAGGCATTGTATATATGTTTACTACAGAACACCATATCAGCCTTATTGattactacaggacactacaccagCCTTGGAGATTATTGTGTTTACTACTTTAGCCTTAAAGATCACATTATTTTACAACAGAACCCTACAGAAGTTTACATTGTCatgtggatttgattgcatttggcAACACAagcgttagtgaggtcaggatgttggatcaCCCCATTTTATCCACTTTAACGTACAGGATGGAGCACCCTTATCTATCAGCATCATACCTCTAAACCAGCCCAGCCCGCAATTCGATGGACAAGTCAGTTGGGCAATTAACAAGAGAATGGTACTGGTCTGACTGCATTgggccaagtgtaaagtttggtggaggggggattttTTTTAGGAGTTGGGCTCGGTCCAAACTCTTAATGCTTCAGTATGAACAGTTTAGACATGGCCCCTTACTTTTCTAACATGACTGCACACTAGTGCACAAAGCAAGGTCCATAAAGACATGGAACTTGACCTCAACCAGAAAGAACACAGAAATCTCTGGCGTGCAAACAACCGTACTCTTTATAAGAGCTGCACTTTACTACAAAATGTACTTAACAATTGTTGAACGGAACACCAATAttaactaatatatttattagttatatttaaatatatttattggagaattttattattatattgagaaatatattctttatataaTATACGCTCCAAAATGCTCTATATAATAATTGTGTGATAATATAAGCTAAAGATGTTATAATAAACTATCATTCTCTTTATGGTTAGGagaacaataatattaataaacacttcttttttaaaaaagttgttattctttttaaatatctgcacaaaataaatggaATCTTTGAAAAAACAACAGTCATCTGGATGATAAATAATTGTTCTTTCACAAATGTATTATTAGTCATTTATAGCACGATTAAAAATAGGCAACAAGCCTGCCAGACGGTTCTGAGCAGCATTGGGTAAATCAGCTCTGGATAATAAGGATAATAAACATTACAGTTATAGTAATGTATACAGTTATAGTATTTTGAGCACACATCTTCAACACTGTCTTGAAAAAACATGGTCGTGTCATTATCATTATTGAAAACGGCTGAAAGACACCTTTTTCATAAGACACCTCCAAAAGACACCTccaaagacctcaaataaactGGGGGCCTGGTTTGACTTCACATAATATGCTTCTGGAAGAATGGTCTAAAATTCCTATAAACACAATCCTAAACCTTGAGTAAAGCCTTCCAGAAAAAGAGTTGAAGCTGTGAGAGATGCAACAGGTGGGCTAACCTCATATTAAACCCTATGAGATAAGAATGGGATGTCACTCaaattcttatttaatgttcGTGCAAAGGCAGAAGAGCGAATACTGTTGGTGATATCTTGTAGAAATTAGATGTCTGATGCTGcattaatgtaaaaaacaaaatcagataTTGCATCTTTAACACTGTTCATGCCTGATGGATTAGTAGGAATGAtataacagcacacacacacatattactaAAAGAATTAAATGAGTGCTTATTTCTCCAATCTAATAATACTTAAGCTGACAGTGCTTAGGTCTGCTACATTCACCTCTTGAGCAAGTCTGAGCAGCTGTCCgcgtgtgtgtgaatgtgtgtgtgtgtatattccCTTCCCCCTGCTCTATTATGTAATACTATAACTTGGCACAGAGCGAGACAACCGGCTCACACGCGCACGCACGCGCGCGCTCACACCCTATCCAAACACATAACTGTCTTTAGCTTTTAGCACTAaagctacaacacacacacacacacacacacacacacacacacacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210836 lncRNA upstream 10611 1228051 ~ 1239373 (+) True G155484
TU210834 lncRNA upstream 13195 1149208 ~ 1236789 (+) True G155483
TU210873 lncRNA upstream 26655 1222746 ~ 1223329 (+) False LOC103036073
TU210841 lncRNA upstream 81961 1160509 ~ 1168023 (+) True G155487
TU210829 lncRNA upstream 101062 1139974 ~ 1148922 (+) True G155478
TU210984 lncRNA downstream 19227 1357950 ~ 1361894 (+) True G155573
TU211000 lncRNA downstream 26277 1365000 ~ 1371912 (+) True G155579
XR_002651217.1 lncRNA downstream 41004 1379727 ~ 1383644 (+) True LOC111194749
XR_002651216.1 lncRNA downstream 41004 1379727 ~ 1383041 (+) False LOC111194749
TU211002 lncRNA downstream 43113 1381836 ~ 1382137 (+) True G155581
XM_022679957.1 mRNA upstream 26634 1203903 ~ 1223350 (+) True LOC103036073
XM_007251581.3 mRNA upstream 143192 1103450 ~ 1106792 (+) True LOC103044527
XM_015606424.2 mRNA upstream 143192 1103451 ~ 1106792 (+) False LOC103044527
XM_022679465.1 mRNA upstream 297504 927719 ~ 952480 (+) True daw1
XM_007251568.3 mRNA upstream 531279 713909 ~ 718705 (+) True sertad3
XM_022679466.1 mRNA downstream 76684 1415407 ~ 1457526 (+) True LOC103025301
XM_022679467.1 mRNA downstream 76684 1415407 ~ 1457526 (+) False LOC103025301
XM_022679468.1 mRNA downstream 76684 1415407 ~ 1457526 (+) False LOC103025301
XM_022679960.1 mRNA downstream 228392 1567115 ~ 1622172 (+) True trip12
XM_022679961.1 mRNA downstream 313931 1652654 ~ 1658962 (+) True LOC103036673
TU210867 other upstream 35321 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 1096721 149347 ~ 153263 (+) True G155206
TU211262 other downstream 1399638 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3818431 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 6033653 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 6048779 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 6261844 7600567 ~ 7606668 (+) True G156840

Expression Profile