RNA id: TU210884


Basic Information

Item Value
RNA id TU210884
length 274
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G155514
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1262053 ~ 1263683 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACTGTATCTCTTACCCATCTGGGGTTCTGGTTCTCTCTCTTGTGGTCAGTAATGCGTTTGTCTCTGGGCTGTGGTCTCCTCTCATCTCCATCAGGGCAGCTCCGGCGCTCTCTTGGCCCATAGGTGTTCGCCCACGTCCTCAGTGGGGGGCGTTCTTCAGTTTTTTAGGGTCCAGCAGCGTCCTGGAGTCACACAGTCCGGTTCGGGCCATAGTGCACAGGGTCTGCGGCTACCTGAGCCTCCAACAACCGCCAAAGGTTGAAGAAACCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210836 lncRNA upstream 22680 1228051 ~ 1239373 (+) True G155484
TU210834 lncRNA upstream 25264 1149208 ~ 1236789 (+) True G155483
TU210873 lncRNA upstream 38724 1222746 ~ 1223329 (+) False LOC103036073
TU210841 lncRNA upstream 94030 1160509 ~ 1168023 (+) True G155487
TU210829 lncRNA upstream 113131 1139974 ~ 1148922 (+) True G155478
TU210851 lncRNA downstream 2137 1265820 ~ 1278262 (+) True G155491
TU210860 lncRNA downstream 2137 1265820 ~ 1268195 (+) False G155491
TU210847 lncRNA downstream 33612 1297295 ~ 1346004 (+) True G155490
TU210848 lncRNA downstream 33612 1297295 ~ 1346004 (+) False G155490
TU210984 lncRNA downstream 94267 1357950 ~ 1361894 (+) True G155573
XM_022679957.1 mRNA upstream 38703 1203903 ~ 1223350 (+) True LOC103036073
XM_007251581.3 mRNA upstream 155261 1103450 ~ 1106792 (+) True LOC103044527
XM_015606424.2 mRNA upstream 155261 1103451 ~ 1106792 (+) False LOC103044527
XM_022679465.1 mRNA upstream 309573 927719 ~ 952480 (+) True daw1
XM_007251568.3 mRNA upstream 543348 713909 ~ 718705 (+) True sertad3
XM_022679466.1 mRNA downstream 151724 1415407 ~ 1457526 (+) True LOC103025301
XM_022679467.1 mRNA downstream 151724 1415407 ~ 1457526 (+) False LOC103025301
XM_022679468.1 mRNA downstream 151724 1415407 ~ 1457526 (+) False LOC103025301
XM_022679960.1 mRNA downstream 303432 1567115 ~ 1622172 (+) True trip12
XM_022679961.1 mRNA downstream 388971 1652654 ~ 1658962 (+) True LOC103036673
TU210867 other upstream 47390 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 1108790 149347 ~ 153263 (+) True G155206
TU210855 other downstream 2137 1265820 ~ 1269379 (+) False G155491
TU210857 other downstream 2137 1265820 ~ 1268195 (+) False G155491
TU210859 other downstream 2137 1265820 ~ 1268195 (+) False G155491
TU211262 other downstream 1474678 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3893471 5157154 ~ 5157400 (+) True G156188

Expression Profile