RNA id: TU211125


Basic Information

Item Value
RNA id TU211125
length 512
lncRNA type intronic
GC content 0.45
exon number 1
gene id G155669
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1597104 ~ 1597615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agactgatgcaggtttatctgaaccagactgtagactgataCAGGTTTATCTaaaccagactgtagactgatgcaggtttatctgaaccagactgtagactgatgcaggtttGTCAGAACAAGTGTATAACCCAACACAGTTTGTctaaaacctggaattagcccaaaaccccccaaaaattaACAACATGTCTGTAGCTAAAGACTGCCTTGTCTGAACACGACTGTAGCTAAAGACTGGCTTGTCTGAAAAAACGACTGTAGCTGAACAACGACTGCAGCCCTAGACTGGCTTGCCTGAACGACTGTAGCTGAAAACAACTGTAGCTGAAAACGACTGTAGCCCAAGATTGGATTGTCTGAAAATGACTGTAGCTGAAAACGACTGTAGCCCAAGACTGACTTGTCTGAAAACGGCTGTAGCAGAGCAACGGCTGTACCCCGAGACTGGCTTCTCTGGACACGACTGTAGCTGAAAACGACTGTAGCCCAACATTGTTTGtctataatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210993 lncRNA upstream 125682 1470141 ~ 1471422 (+) True G155576
TU210996 lncRNA upstream 125682 1470141 ~ 1471422 (+) False G155576
XR_002651217.1 lncRNA upstream 213460 1379727 ~ 1383644 (+) True LOC111194749
XR_002651216.1 lncRNA upstream 214063 1379727 ~ 1383041 (+) False LOC111194749
TU211002 lncRNA upstream 214967 1381836 ~ 1382137 (+) True G155581
TU211133 lncRNA downstream 34250 1631865 ~ 1648626 (+) True G155677
TU211136 lncRNA downstream 46344 1643959 ~ 1650935 (+) True G155680
TU211143 lncRNA downstream 80930 1678545 ~ 1680366 (+) True G155685
TU211187 lncRNA downstream 165792 1763407 ~ 1765707 (+) True G155717
TU211192 lncRNA downstream 176826 1774441 ~ 1776874 (+) True G155718
XM_022679466.1 mRNA upstream 139578 1415407 ~ 1457526 (+) True LOC103025301
XM_022679467.1 mRNA upstream 139578 1415407 ~ 1457526 (+) False LOC103025301
XM_022679468.1 mRNA upstream 139578 1415407 ~ 1457526 (+) False LOC103025301
XM_022679957.1 mRNA upstream 373754 1203903 ~ 1223350 (+) True LOC103036073
XM_015606424.2 mRNA upstream 490312 1103451 ~ 1106792 (+) False LOC103044527
XM_022679961.1 mRNA downstream 55039 1652654 ~ 1658962 (+) True LOC103036673
XM_022679474.1 mRNA downstream 65363 1662978 ~ 1673194 (+) True LOC103036983
XM_022679476.1 mRNA downstream 94983 1692598 ~ 1905714 (+) False tspan4
XM_022679477.1 mRNA downstream 96057 1693672 ~ 1905714 (+) False tspan4
XM_022679475.1 mRNA downstream 158337 1755952 ~ 1905714 (+) True tspan4
TU210855 other upstream 327725 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 328909 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 328909 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 382441 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 1443841 149347 ~ 153263 (+) True G155206
TU211262 other downstream 1140746 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3559539 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 5774761 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 5789887 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 6002952 7600567 ~ 7606668 (+) True G156840

Expression Profile