RNA id: TU211136


Basic Information

Item Value
RNA id TU211136
length 482
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G155680
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1643959 ~ 1650935 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACTCTCAGGAGTCTTCTCTGCTCTTTGAAGGTGGCGCAGCATCCTAGGACCCCTGTAATCATGACGATCACCCCCGCCAGAATCAGGATATACGCAGACACAGCGTAGATCCTGGAGGAGAGCAGGCTGATGTAGTCACTCTTCGCTGCTACTGTCCATATCCCTACGGCCATCACAGCGCCTCCTGCCAGCCAAAACAGGAAGTTAAAAGTGAACAGCAGGTATTTCAGACAGACAGTTCCACATGTCCCTTTCTTTCCTTCGTACGCCCCCATtctgactgtgtgtgtttgtggagctTCAGAACCAGATCTTCTCGCTGATCCTCTACAGATGATCTTCTTCAGCTGAATCTCCACTGATCTGGGCCGTTAAAGTGTTTAGTTTATGGAGATTCTACGATTTAAAGTCAGTTACTCTCCTTCTCAGTCCCACTGCTCCTCCTCTGCCTGCGCTTTCAACACCAGCAACTTCCTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211125 lncRNA upstream 46344 1597104 ~ 1597615 (+) True G155669
TU210993 lncRNA upstream 172537 1470141 ~ 1471422 (+) True G155576
TU210996 lncRNA upstream 172537 1470141 ~ 1471422 (+) False G155576
XR_002651216.1 lncRNA upstream 260918 1379727 ~ 1383041 (+) False LOC111194749
TU211143 lncRNA downstream 27610 1678545 ~ 1680366 (+) True G155685
TU211187 lncRNA downstream 112472 1763407 ~ 1765707 (+) True G155717
TU211192 lncRNA downstream 123506 1774441 ~ 1776874 (+) True G155718
TU211196 lncRNA downstream 275499 1926434 ~ 1947167 (+) True G155722
TU211197 lncRNA downstream 275499 1926434 ~ 1928724 (+) False G155722
XM_022679960.1 mRNA upstream 21787 1567115 ~ 1622172 (+) True trip12
XM_022679466.1 mRNA upstream 186433 1415407 ~ 1457526 (+) True LOC103025301
XM_022679467.1 mRNA upstream 186433 1415407 ~ 1457526 (+) False LOC103025301
XM_022679468.1 mRNA upstream 186433 1415407 ~ 1457526 (+) False LOC103025301
XM_022679957.1 mRNA upstream 420609 1203903 ~ 1223350 (+) True LOC103036073
XM_022679961.1 mRNA downstream 1719 1652654 ~ 1658962 (+) True LOC103036673
XM_022679474.1 mRNA downstream 12043 1662978 ~ 1673194 (+) True LOC103036983
XM_022679476.1 mRNA downstream 41663 1692598 ~ 1905714 (+) False tspan4
XM_022679477.1 mRNA downstream 42737 1693672 ~ 1905714 (+) False tspan4
XM_022679475.1 mRNA downstream 105017 1755952 ~ 1905714 (+) True tspan4
TU210855 other upstream 374580 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 375764 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 375764 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 429296 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 1490696 149347 ~ 153263 (+) True G155206
TU211262 other downstream 1087426 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3506219 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 5721441 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 5736567 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 5949632 7600567 ~ 7606668 (+) True G156840

Expression Profile