RNA id: TU211198


Basic Information

Item Value
RNA id TU211198
length 1262
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G155722
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1926434 ~ 1947167 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGTTCTGAAGCAagctttattaaaataaaaacttgaaGAAACATCACGCAGACAAAAACGTCACTGATAAAAGTCTACTGAAGCTCTTTCCACCTGTCCCTCAGTGCTGTCAGAGCATCCTAACCACACGTCCTAGCAGTGCAGTGAAGACCACAGCAGAACTACGGCTCAGTTTAACACCTCAAAATTCAAACCACACAGCTGACCCTCAGGCCCTACTGTACAGAATACATTACTGATAGGTTCTCACAGATTCTGTTCTGTGaaggtgtgtatctgtgtgtgtgtgtgtgtatggattttAGGGCAGGAGGCTCTGTAGAGGGGAAGAAGAAGGAGCTCAGACTTAAGGAGTGAAACATACAAAACATgaagacaaaacacacacacacacacacacacacacacacacacacacacactctctctctcacacacacacactcgcgctcCTGCTCGCCCACACCTGTTGGATTATTTATATCTATGTACAGCAGTTGTTCAGACCAACAGGGTTAGTGGATCCTGGTGAGCTCCTCCACGATTTTAATCACTTCATCCACCGTGGCCTCCCGCTTCATTCCACTGCCATCATCAATCTGTAGCGTGCTGACAACCTCCTGCATCTTGGCTCGGCCCAGATCTAAAAAGCTCTCGATCAGATCGCCGTCGATGAAGCCTGTAGCCTGTTCAGTCTTCCGCTCCGTATTGAACGACCTCCAGAAGTTGTGCTCGATCTTGCCCACGCTCTTAATGACCTTGTTGAGCCTGTTCTGTAAATCCATGAGTAAACTGTACCAGCCTTCTGACAGAGACGTCACTAATcCGATCATGCCGTTAACTGTGCCGAAGAGCACAGAACCCTGGGTAGGTGTGGAACTCTCCCCGAGGTTCTGCAGGACTAGAGAACCGTGACAGAACACGTTCACAAACTCGCCCAAGTGGAACACGCCCACCTCCTGCAAATGCTGCCTCTCCTCATCTGTGGTGGCAGcgctgaaaaacacagagcaagaaAGTGGATCATGTTCATCTGCCTTAAGATCATCAGACCAGAGCTTCCTCACCCAATCAGAACGAGGAGGTAGGGTAAATACACATACACTGACATATCTGTCCATGCATCTTCCATGTGCCTTAATATCAGAAATGCGTTTTTATGCTTCCGTTcgtttgtgttttatataaacaGTTCTCATGTTTTTCTTGAACTAAATGGATTTTCAGTGGTCCTGCTTTTTTCCATCTGTGCTGGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211192 lncRNA upstream 149560 1774441 ~ 1776874 (+) True G155718
TU211187 lncRNA upstream 160727 1763407 ~ 1765707 (+) True G155717
TU211143 lncRNA upstream 246068 1678545 ~ 1680366 (+) True G155685
TU211136 lncRNA upstream 275499 1643959 ~ 1650935 (+) True G155680
TU211133 lncRNA upstream 277808 1631865 ~ 1648626 (+) True G155677
TU211231 lncRNA downstream 644407 2575080 ~ 2575382 (+) True G155750
TU211238 lncRNA downstream 703489 2634162 ~ 2634608 (+) True G155757
TU211244 lncRNA downstream 768358 2699031 ~ 2719738 (+) True G155762
TU211248 lncRNA downstream 803789 2734462 ~ 2734664 (+) True G155765
TU211271 lncRNA downstream 839417 2770090 ~ 2770853 (+) True G155785
XM_022679476.1 mRNA upstream 20720 1692598 ~ 1905714 (+) False tspan4
XM_022679477.1 mRNA upstream 20720 1693672 ~ 1905714 (+) False tspan4
XM_022679475.1 mRNA upstream 20720 1755952 ~ 1905714 (+) True tspan4
XM_022679474.1 mRNA upstream 253240 1662978 ~ 1673194 (+) True LOC103036983
XM_022679961.1 mRNA upstream 267472 1652654 ~ 1658962 (+) True LOC103036673
XM_022679481.1 mRNA downstream 740830 2671503 ~ 2720959 (+) False lrch3
XM_022679484.1 mRNA downstream 740830 2671503 ~ 2720959 (+) False lrch3
XM_022679479.1 mRNA downstream 740830 2671503 ~ 2715724 (+) True lrch3
XM_007243985.3 mRNA downstream 740830 2671503 ~ 2715724 (+) False lrch3
XM_007243988.3 mRNA downstream 740830 2671503 ~ 2715724 (+) False lrch3
TU210855 other upstream 657055 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 658239 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 658239 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 711771 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 1773171 149347 ~ 153263 (+) True G155206
TU211262 other downstream 807688 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 3226481 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 5441703 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 5456829 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 5669894 7600567 ~ 7606668 (+) True G156840

Expression Profile