RNA id: TU211238


Basic Information

Item Value
RNA id TU211238
length 447
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G155757
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 2634162 ~ 2634608 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATTTCCACTCCCGCAGGCCGGAACGTCCTGCACCCAGACCTCGGGGCCGACCCCCCGGCCGGACTCTTGGCGCTCCTGGAGTAGCGCGTAGGGAAGGGGGTTCTGTAACACCTGCTCGCACTACACCTTTAAGATCCGCCTCTCCTGAGTATTGAGGCTGACTCCTCCTCTCCCACACACCGGTGGGAGATCACTCATCTACAAGACTATATAAACTGGACTCATGCACTGCCTAGTTGCGAGATATTGCCACATTGTGTCTTATCGAGCGTTATTGTATGTACTGTTTCCCTGGTTTCTGATCTACTGCTTCCCCTTGACTACGATTCTAGCCTAGCGTGTCTTTTCTGGTCTTTTGAACTTTTGCCTGTCTGACTACGATTTTTGCCTTCTGTTTTGGACTAATAAACCTGTCTGCATTTGCATCCAAACTCCTGGTCGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211231 lncRNA upstream 58780 2575080 ~ 2575382 (+) True G155750
TU211196 lncRNA upstream 686995 1926434 ~ 1947167 (+) True G155722
TU211199 lncRNA upstream 691987 1926434 ~ 1942175 (+) False G155722
TU211198 lncRNA upstream 703489 1926434 ~ 1930673 (+) False G155722
TU211197 lncRNA upstream 705438 1926434 ~ 1928724 (+) False G155722
TU211244 lncRNA downstream 64423 2699031 ~ 2719738 (+) True G155762
TU211248 lncRNA downstream 99854 2734462 ~ 2734664 (+) True G155765
TU211271 lncRNA downstream 135482 2770090 ~ 2770853 (+) True G155785
TU211278 lncRNA downstream 144979 2779587 ~ 2779883 (+) True G155792
TU211279 lncRNA downstream 145520 2780128 ~ 2780371 (+) True G155793
XM_022679476.1 mRNA upstream 728448 1692598 ~ 1905714 (+) False tspan4
XM_022679477.1 mRNA upstream 728448 1693672 ~ 1905714 (+) False tspan4
XM_022679475.1 mRNA upstream 728448 1755952 ~ 1905714 (+) True tspan4
XM_022679474.1 mRNA upstream 960968 1662978 ~ 1673194 (+) True LOC103036983
XM_022679961.1 mRNA upstream 975200 1652654 ~ 1658962 (+) True LOC103036673
XM_022679481.1 mRNA downstream 36895 2671503 ~ 2720959 (+) False lrch3
XM_022679484.1 mRNA downstream 36895 2671503 ~ 2720959 (+) False lrch3
XM_022679479.1 mRNA downstream 36895 2671503 ~ 2715724 (+) True lrch3
XM_007243985.3 mRNA downstream 36895 2671503 ~ 2715724 (+) False lrch3
XM_007243988.3 mRNA downstream 36895 2671503 ~ 2715724 (+) False lrch3
TU210855 other upstream 1364783 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 1365967 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 1365967 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 1419499 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 2480899 149347 ~ 153263 (+) True G155206
TU211262 other downstream 103753 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 2522546 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 4737768 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 4752894 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 4965959 7600567 ~ 7606668 (+) True G156840

Expression Profile