RNA id: TU211248


Basic Information

Item Value
RNA id TU211248
length 203
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G155765
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 2734462 ~ 2734664 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTCTCTCTCCACTTTGGCCAGATTGTTGTGGGAGGATGAGCTTTCCTCCAGCGTGCGTCTGAGCTGGTTTTGGGACAGATGAAGCTCTTCCACTGCCTCAGAGAGTTCAGAATCATTAACCCGACTCTTACGCACAGTCTTCAGGTGACTCTCAGCGGCCTGGTGCTGTTTAATGATCACGCTGATATGTGCAGCCTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211244 lncRNA upstream 14724 2699031 ~ 2719738 (+) True G155762
TU211238 lncRNA upstream 99854 2634162 ~ 2634608 (+) True G155757
TU211231 lncRNA upstream 159080 2575080 ~ 2575382 (+) True G155750
TU211199 lncRNA upstream 792287 1926434 ~ 1942175 (+) False G155722
TU211198 lncRNA upstream 803789 1926434 ~ 1930673 (+) False G155722
TU211271 lncRNA downstream 35426 2770090 ~ 2770853 (+) True G155785
TU211278 lncRNA downstream 44923 2779587 ~ 2779883 (+) True G155792
TU211279 lncRNA downstream 45464 2780128 ~ 2780371 (+) True G155793
TU211296 lncRNA downstream 92932 2827596 ~ 2828274 (+) True G155809
TU211350 lncRNA downstream 256295 2990959 ~ 2991367 (+) True G155854
XM_022679481.1 mRNA upstream 13503 2671503 ~ 2720959 (+) False lrch3
XM_022679484.1 mRNA upstream 13503 2671503 ~ 2720959 (+) False lrch3
XM_022679479.1 mRNA upstream 18738 2671503 ~ 2715724 (+) True lrch3
XM_007243985.3 mRNA upstream 18738 2671503 ~ 2715724 (+) False lrch3
XM_007243988.3 mRNA upstream 18738 2671503 ~ 2715724 (+) False lrch3
XM_022679486.1 mRNA downstream 57375 2792039 ~ 2806754 (+) True parp9
XM_022679487.1 mRNA downstream 57966 2792630 ~ 2806754 (+) False parp9
XM_015606067.2 mRNA downstream 148163 2882827 ~ 2938070 (+) True LOC103044837
XM_007230030.2 mRNA downstream 208110 2942774 ~ 2963551 (+) True ndufa10
XM_022679492.1 mRNA downstream 876354 3611018 ~ 3614491 (+) True LOC111194753
TU210855 other upstream 1465083 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 1466267 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 1466267 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 1519799 1203741 ~ 1214663 (+) False LOC103036073
TU210384 other upstream 2581199 149347 ~ 153263 (+) True G155206
TU211262 other downstream 3697 2738361 ~ 2755112 (+) True G155776
TU211750 other downstream 2422490 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 4637712 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 4652838 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 4865903 7600567 ~ 7606668 (+) True G156840

Expression Profile