RNA id: TU211279


Basic Information

Item Value
RNA id TU211279
length 244
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G155793
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 2780128 ~ 2780371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGACACCACATTTCGATATGATGCAATACAATTGAAATTATATGATATATCAAGAAGTATAAGACCACTTAaggatttttaccaaattgaaaacctctggaatataatcaagaggaagatcacaagacatcaaaccaaactgaactgcttgaatgttagcaccaggagtaaaggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211278 lncRNA upstream 245 2779587 ~ 2779883 (+) True G155792
TU211271 lncRNA upstream 9275 2770090 ~ 2770853 (+) True G155785
TU211248 lncRNA upstream 45464 2734462 ~ 2734664 (+) True G155765
TU211244 lncRNA upstream 60390 2699031 ~ 2719738 (+) True G155762
TU211238 lncRNA upstream 145520 2634162 ~ 2634608 (+) True G155757
TU211296 lncRNA downstream 47225 2827596 ~ 2828274 (+) True G155809
TU211350 lncRNA downstream 210588 2990959 ~ 2991367 (+) True G155854
TU211353 lncRNA downstream 235333 3015704 ~ 3035326 (+) True G155856
XR_002651196.1 lncRNA downstream 249204 3029575 ~ 3030104 (+) False LOC111194715
TU211355 lncRNA downstream 249272 3029643 ~ 3030986 (+) True LOC111194715
XM_022679481.1 mRNA upstream 59169 2671503 ~ 2720959 (+) False lrch3
XM_022679484.1 mRNA upstream 59169 2671503 ~ 2720959 (+) False lrch3
XM_022679479.1 mRNA upstream 64404 2671503 ~ 2715724 (+) True lrch3
XM_007243985.3 mRNA upstream 64404 2671503 ~ 2715724 (+) False lrch3
XM_007243988.3 mRNA upstream 64404 2671503 ~ 2715724 (+) False lrch3
XM_022679486.1 mRNA downstream 11668 2792039 ~ 2806754 (+) True parp9
XM_022679487.1 mRNA downstream 12259 2792630 ~ 2806754 (+) False parp9
XM_015606067.2 mRNA downstream 102456 2882827 ~ 2938070 (+) True LOC103044837
XM_007230030.2 mRNA downstream 162403 2942774 ~ 2963551 (+) True ndufa10
XM_022679492.1 mRNA downstream 830647 3611018 ~ 3614491 (+) True LOC111194753
TU211262 other upstream 25016 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 1510749 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 1511933 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 1511933 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 1565465 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 2376783 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 4592005 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 4607131 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 4820196 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 5789559 8569930 ~ 8570877 (+) True G157055

Expression Profile