RNA id: TU211353



Basic Information


Item Value
RNA id TU211353
length 317
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G155856
representative True

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3015704 ~ 3035326 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


attGTCAGGGTGGAGGTGCAGggaagacgaggaggcggacgcaaatgcaaacaacaggggatttattaacaaaaatagatacaaaatacaactgggataaactgaaaacaagactGAGGAAACcggggaaaacatggaacactgacagacgataaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacaaaagaacacaggtgagtggaaaaacacaggcagaacacaggggcacggGTGCCTGTCCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU211350 lncRNA upstream 24337 2990959 ~ 2991367 (+) True G155854
TU211296 lncRNA upstream 187430 2827596 ~ 2828274 (+) True G155809
TU211279 lncRNA upstream 235333 2780128 ~ 2780371 (+) True G155793
TU211278 lncRNA upstream 235821 2779587 ~ 2779883 (+) True G155792
TU211271 lncRNA upstream 244851 2770090 ~ 2770853 (+) True G155785
TU211364 lncRNA downstream 84709 3120035 ~ 3121160 (+) True G155866
TU211470 lncRNA downstream 578808 3614134 ~ 3614363 (+) False LOC111194753
TU211478 lncRNA downstream 641306 3676632 ~ 3676857 (+) True G155956
TU211494 lncRNA downstream 733247 3768573 ~ 3769327 (+) True G155967
TU211503 lncRNA downstream 811523 3846849 ~ 3847617 (+) True G155976
XM_007230030.2 mRNA upstream 52153 2942774 ~ 2963551 (+) True ndufa10
XM_015606067.2 mRNA upstream 77634 2882827 ~ 2938070 (+) True LOC103044837
XM_022679486.1 mRNA upstream 208950 2792039 ~ 2806754 (+) True parp9
XM_022679487.1 mRNA upstream 208950 2792630 ~ 2806754 (+) False parp9
XM_007243989.3 mRNA upstream 299980 2671503 ~ 2715724 (+) False lrch3
XM_022679492.1 mRNA downstream 575692 3611018 ~ 3614491 (+) True LOC111194753
XM_015601072.2 mRNA downstream 823180 3858506 ~ 3899215 (+) True LOC103025504
XM_022679493.1 mRNA downstream 825332 3860658 ~ 3899215 (+) False LOC103025504
XM_007232420.3 mRNA downstream 894005 3929331 ~ 3932163 (+) True LOC103025196
XM_022679498.1 mRNA downstream 942426 3977752 ~ 3999462 (+) True LOC103036562
TU211262 other upstream 260592 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 1746325 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 1747509 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 1747509 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 1801041 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 2121828 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 4337050 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 4352176 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 4565241 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 5534604 8569930 ~ 8570877 (+) True G157055

Expression Profile