RNA id: TU211494


Basic Information

Item Value
RNA id TU211494
length 755
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G155967
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3768573 ~ 3769327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCcatattgcaaatctgactcggtcatgcagatttctcctgtacaacatccgaagaattcgaccgtttctgtctcaggatgccactcaggtgcttgtgcagtctcttgtcatctcaagacttgactactgcaactctctactggctggtcttccactgcgagccaccaaaccactacagttagttcagaacgcggcagcacgactcgtcttcaatcttccgaagttcagtcatgtgactcctttgctgcgttccctccactggcttcctgttgccgcccgcatccgattcaaaaccctgacgctggcctacaaggcaaaaaacggaccagcaccttcatacctgatggcgatggtcaaagccagatctgcaccaagagctcttagagcttccagtacggctcggctcgaacctccatccctcaaaactcacagaaaacaaacatccagactcttctctgtgctggagcaccaaggtggtggaatgaacttccactggatgtcagaacagcagagtcactcacggtcttcaaacgtcgactgaagacacatcttttcaaagagttcctaaactaataataataataaaaaaaaataaaaaaaaggttcctagggttcttaacatgattaagctctatgtatctcttgatcctagtctacaaactagctttggatatcttaagtaactttgaagcactgttgtaagtcgctctggataagggcgtctgctaaataccataaatgtaaatgtaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211478 lncRNA upstream 91716 3676632 ~ 3676857 (+) True G155956
TU211470 lncRNA upstream 154210 3614134 ~ 3614363 (+) False LOC111194753
TU211364 lncRNA upstream 647413 3120035 ~ 3121160 (+) True G155866
TU211353 lncRNA upstream 733247 3015704 ~ 3035326 (+) True G155856
TU211503 lncRNA downstream 77522 3846849 ~ 3847617 (+) True G155976
TU211505 lncRNA downstream 79128 3848455 ~ 3848872 (+) True G155978
TU211515 lncRNA downstream 137667 3906994 ~ 3907195 (+) True G155985
TU211520 lncRNA downstream 161506 3930833 ~ 3932157 (+) False LOC103025196
TU211548 lncRNA downstream 191567 3960894 ~ 4005992 (+) True G156009
XM_022679492.1 mRNA upstream 154082 3611018 ~ 3614491 (+) True LOC111194753
XM_007230030.2 mRNA upstream 805022 2942774 ~ 2963551 (+) True ndufa10
XM_015606067.2 mRNA upstream 830503 2882827 ~ 2938070 (+) True LOC103044837
XM_022679486.1 mRNA upstream 961819 2792039 ~ 2806754 (+) True parp9
XM_015601072.2 mRNA downstream 89179 3858506 ~ 3899215 (+) True LOC103025504
XM_022679493.1 mRNA downstream 91331 3860658 ~ 3899215 (+) False LOC103025504
XM_007232420.3 mRNA downstream 160004 3929331 ~ 3932163 (+) True LOC103025196
XM_022679498.1 mRNA downstream 208425 3977752 ~ 3999462 (+) True LOC103036562
XM_022679496.1 mRNA downstream 238999 4008326 ~ 4123480 (+) True LOC103036857
TU211262 other upstream 1013461 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 2499194 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 2500378 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 2500378 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 2553910 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 1387827 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 3603049 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 3618175 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 3831240 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 4800603 8569930 ~ 8570877 (+) True G157055

Expression Profile