RNA id: TU211505


Basic Information

Item Value
RNA id TU211505
length 418
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G155978
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3848455 ~ 3848872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcttctttttcagccaacctcactactgctaaagctgaattttatcacaataaattctgctctctcacagactcccggaaactatttgctacatttaaatcactactcaaccctccgcctcctcctccggctacatgccttacggctgaaacacttgcctcattctttactggcaaagtggcggccatcagcaaccagtttactgatgcacaatgtagcagtcctactacatcctctactgcccggtgtccctccaccgaaggcgttgctttctcctcgttcactcctctcactgagaacgagacactggctctcctaacacgtagccgtcctactacgtgtccgcttgacccaattccttcaaacctactgcaaactatcgcacctgcaatcattccggctatcactcacacgatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211503 lncRNA upstream 838 3846849 ~ 3847617 (+) True G155976
TU211494 lncRNA upstream 79128 3768573 ~ 3769327 (+) True G155967
TU211478 lncRNA upstream 171598 3676632 ~ 3676857 (+) True G155956
TU211470 lncRNA upstream 234092 3614134 ~ 3614363 (+) False LOC111194753
TU211364 lncRNA upstream 727295 3120035 ~ 3121160 (+) True G155866
TU211515 lncRNA downstream 58122 3906994 ~ 3907195 (+) True G155985
TU211520 lncRNA downstream 81961 3930833 ~ 3932157 (+) False LOC103025196
TU211548 lncRNA downstream 112022 3960894 ~ 4005992 (+) True G156009
TU211600 lncRNA downstream 339634 4188506 ~ 4188789 (+) True G156050
TU211610 lncRNA downstream 396379 4245251 ~ 4245521 (+) True G156060
XM_022679492.1 mRNA upstream 233964 3611018 ~ 3614491 (+) True LOC111194753
XM_007230030.2 mRNA upstream 884904 2942774 ~ 2963551 (+) True ndufa10
XM_015606067.2 mRNA upstream 910385 2882827 ~ 2938070 (+) True LOC103044837
XM_022679486.1 mRNA upstream 1041701 2792039 ~ 2806754 (+) True parp9
XM_015601072.2 mRNA downstream 9634 3858506 ~ 3899215 (+) True LOC103025504
XM_022679493.1 mRNA downstream 11786 3860658 ~ 3899215 (+) False LOC103025504
XM_007232420.3 mRNA downstream 80459 3929331 ~ 3932163 (+) True LOC103025196
XM_022679498.1 mRNA downstream 128880 3977752 ~ 3999462 (+) True LOC103036562
XM_022679496.1 mRNA downstream 159454 4008326 ~ 4123480 (+) True LOC103036857
TU211262 other upstream 1093343 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 2579076 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 2580260 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 2580260 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 2633792 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 1308282 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 3523504 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 3538630 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 3751695 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 4721058 8569930 ~ 8570877 (+) True G157055

Expression Profile