RNA id: TU211548


Basic Information

Item Value
RNA id TU211548
length 1041
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G156009
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3960894 ~ 4005992 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgaggtagTGAGGTTGTATTTGGATCCCTGTAAAATGGCATTCACCAGCAGATATGCCTACATGTGTCCAGTGTTCTTCACTGCACTCGTGTTCCGGTTCTTCTGATCCACACTTACTAATGCGTTCATCTCCACCCAGTTCTGCAGTcttttataaatacatacatacaataacTATAAACACTGCAGGTTTTAtccattatatacatatatattatataagatatataaatcaatacttattttcattgttttatatgggttttttggaaataaatgtattctCTCTAGCTAAAGTTAATTCAGGGTCTTTGTACTAATCTGACGTTGCTACTGTTCACCTGAAATATCGtaactttcacaaaaaaaataaataaataaacaaagcttTACAGTTCCAATTTtgtagcatttctattggtccgtttatcatgacattttgaGACAATGTAAAGATAAACTGCcaaatttgctttaaaatggcaaaaagaaaacaacataaaatacaaggtttttcATGATGGTTAcgacatattttaaaatatatatcactaTTTTTCACATCTCACCGTCATCTGTGAAAGTTAATTGATACTGCAAGTTGTTGTGGTCTCCTGGTTTCAGACTCTCAGTTCCTcagctgttcctcactgttttAATCACGAGTGTAGATTGTTGTGGCTTTCATTTGGTTTGAtttcatttgctttttttggtTTTGATGCTACACTAGTTTGCCATGTAGCAGTTGCACTGTGCAATATTGGACAGTATGAGGAGTGGGGAAGTGTAACCCTCTGATGTAATGTCTCTACAGTTTGCGATAGTGTATCCTCTCTAGTTCTCAGTGATTTAGATGTGACCAAGCCTTCTCAACTTTGTCACATTAAGCGGGTTTTCCAGGTGACTATTTTGGTGAGTGTCAAAATAAGAGTTTATGGTGTATTGTCAAGATTcactttgaattaaaaaaaatctattgctGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211520 lncRNA upstream 28737 3930833 ~ 3932157 (+) False LOC103025196
TU211515 lncRNA upstream 53699 3906994 ~ 3907195 (+) True G155985
TU211505 lncRNA upstream 112022 3848455 ~ 3848872 (+) True G155978
TU211503 lncRNA upstream 113277 3846849 ~ 3847617 (+) True G155976
TU211494 lncRNA upstream 191567 3768573 ~ 3769327 (+) True G155967
TU211600 lncRNA downstream 182514 4188506 ~ 4188789 (+) True G156050
TU211610 lncRNA downstream 239259 4245251 ~ 4245521 (+) True G156060
TU211612 lncRNA downstream 241830 4247822 ~ 4248039 (+) True G156062
TU211616 lncRNA downstream 263513 4269505 ~ 4269708 (+) True G156066
TU211630 lncRNA downstream 363738 4369730 ~ 4370105 (+) True G156080
XM_007232420.3 mRNA upstream 28731 3929331 ~ 3932163 (+) True LOC103025196
XM_015601072.2 mRNA upstream 61679 3858506 ~ 3899215 (+) True LOC103025504
XM_022679493.1 mRNA upstream 61679 3860658 ~ 3899215 (+) False LOC103025504
XM_022679492.1 mRNA upstream 346403 3611018 ~ 3614491 (+) True LOC111194753
XM_007230030.2 mRNA upstream 997343 2942774 ~ 2963551 (+) True ndufa10
XM_022679496.1 mRNA downstream 2334 4008326 ~ 4123480 (+) True LOC103036857
XM_022679497.1 mRNA downstream 2334 4008326 ~ 4122821 (+) False LOC103036857
XM_022679495.1 mRNA downstream 2512 4008504 ~ 4123480 (+) False LOC103036857
XM_022679964.1 mRNA downstream 290327 4296319 ~ 4510540 (+) True LOC103029469
XM_022679965.1 mRNA downstream 569676 4575668 ~ 4633700 (+) False LOC103030011
TU211262 other upstream 1205782 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 2691515 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 2692699 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 2692699 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 2746231 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 1151162 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 3366384 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 3381510 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 3594575 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 4563938 8569930 ~ 8570877 (+) True G157055

Expression Profile