RNA id: TU211610


Basic Information

Item Value
RNA id TU211610
length 271
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G156060
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4245251 ~ 4245521 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacctttgtcggtgagagagagagagagtcgatgcttatagagaagttgtgttgaaaagatggttttgctggtataaccagaagttcagtctttgagagatttaattgaaggtgatgctccttcatccatgaggatatgtcagagagacactgcgatatccgtgcagagattgagtgatcttcaggtgagaacgacaggtatagctgggtgtcatcagcaaagcaatggtaggaaaatccgtgtgagcggacaacctgaccaagagaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211600 lncRNA upstream 56462 4188506 ~ 4188789 (+) True G156050
TU211548 lncRNA upstream 239259 3960894 ~ 4005992 (+) True G156009
TU211520 lncRNA upstream 313094 3930833 ~ 3932157 (+) False LOC103025196
TU211515 lncRNA upstream 338056 3906994 ~ 3907195 (+) True G155985
TU211505 lncRNA upstream 396379 3848455 ~ 3848872 (+) True G155978
TU211612 lncRNA downstream 2301 4247822 ~ 4248039 (+) True G156062
TU211616 lncRNA downstream 23984 4269505 ~ 4269708 (+) True G156066
TU211630 lncRNA downstream 124209 4369730 ~ 4370105 (+) True G156080
TU211646 lncRNA downstream 238869 4484390 ~ 4484641 (+) True G156096
TU211645 lncRNA downstream 267299 4512820 ~ 4513705 (+) True G156095
XM_022679496.1 mRNA upstream 121771 4008326 ~ 4123480 (+) True LOC103036857
XM_022679495.1 mRNA upstream 121771 4008504 ~ 4123480 (+) False LOC103036857
XM_022679497.1 mRNA upstream 122430 4008326 ~ 4122821 (+) False LOC103036857
XM_022679498.1 mRNA upstream 245789 3977752 ~ 3999462 (+) True LOC103036562
XM_007232420.3 mRNA upstream 313088 3929331 ~ 3932163 (+) True LOC103025196
XM_022679964.1 mRNA downstream 50798 4296319 ~ 4510540 (+) True LOC103029469
XM_022679965.1 mRNA downstream 330147 4575668 ~ 4633700 (+) False LOC103030011
XM_022679967.1 mRNA downstream 432682 4678203 ~ 4738405 (+) True LOC103037478
XM_007243993.2 mRNA downstream 670707 4916228 ~ 4920871 (+) True LOC103030327
XM_007244015.3 mRNA downstream 1276165 5521686 ~ 5524043 (+) True LOC103036856
TU211262 other upstream 1490139 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 2975872 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 2977056 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 2977056 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 3030588 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 911633 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 3126855 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 3141981 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 3355046 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 4324409 8569930 ~ 8570877 (+) True G157055

Expression Profile