RNA id: TU211646


Basic Information

Item Value
RNA id TU211646
length 252
lncRNA type intronic
GC content 0.37
exon number 1
gene id G156096
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4484390 ~ 4484641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaagcagcagcaggtcagaaagaaactcaataatatatccaaaataaaacaataaaataagtgaatctatgaacccaaaagtctgtgtaaagttccttacagcactttctcataagtttctcactttaactcatgaagtctctcagtacatcctgagagcatctctacaggacagtgtgtgaatgtgtgttcatttatagactgtagctccagtaggtgtgctgggttagtgctggagataaaactagatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211630 lncRNA upstream 114285 4369730 ~ 4370105 (+) True G156080
TU211616 lncRNA upstream 214682 4269505 ~ 4269708 (+) True G156066
TU211612 lncRNA upstream 236351 4247822 ~ 4248039 (+) True G156062
TU211610 lncRNA upstream 238869 4245251 ~ 4245521 (+) True G156060
TU211600 lncRNA upstream 295601 4188506 ~ 4188789 (+) True G156050
TU211645 lncRNA downstream 28179 4512820 ~ 4513705 (+) True G156095
TU211658 lncRNA downstream 65599 4550240 ~ 4550867 (+) True G156107
TU211670 lncRNA downstream 137987 4622628 ~ 4637290 (+) True LOC103030011
TU211673 lncRNA downstream 162987 4647628 ~ 4648023 (+) True G156121
TU211712 lncRNA downstream 383449 4868090 ~ 4868355 (+) True G156151
XM_022679496.1 mRNA upstream 360910 4008326 ~ 4123480 (+) True LOC103036857
XM_022679495.1 mRNA upstream 360910 4008504 ~ 4123480 (+) False LOC103036857
XM_022679497.1 mRNA upstream 361569 4008326 ~ 4122821 (+) False LOC103036857
XM_022679498.1 mRNA upstream 484928 3977752 ~ 3999462 (+) True LOC103036562
XM_007232420.3 mRNA upstream 552227 3929331 ~ 3932163 (+) True LOC103025196
XM_022679965.1 mRNA downstream 91027 4575668 ~ 4633700 (+) False LOC103030011
XM_022679967.1 mRNA downstream 193562 4678203 ~ 4738405 (+) True LOC103037478
XM_007243993.2 mRNA downstream 431587 4916228 ~ 4920871 (+) True LOC103030327
XM_007244015.3 mRNA downstream 1037045 5521686 ~ 5524043 (+) True LOC103036856
XM_007244014.3 mRNA downstream 1052093 5536734 ~ 5597788 (+) True cdyl2
TU211262 other upstream 1729278 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 3215011 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 3216195 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 3216195 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 3269727 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 672513 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 2887735 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 2902861 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 3115926 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 4085289 8569930 ~ 8570877 (+) True G157055

Expression Profile