RNA id: TU211670


Basic Information

Item Value
RNA id TU211670
length 2859
lncRNA type sense_over
GC content 0.38
exon number 3
gene id LOC103030011
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4575668 ~ 4637290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCCAAAATAAGTATAACTAATGAGTGATTAGATTACACACAGTGCAACCCTCTAAGacattataaaaatgtgtatatttacGGTATTCCATGTTCATGTTCAGTAAAGAGTGTCTCCTTTCACAGTGTATGTCACAACGAGGTTATAGGTGTGAGCCGGGTGGGTAACGATGCAGAGAGTCTGGGCAGAGACCACTGGAATGAGATGCTCACGTACCCTCGCAAGCCAATCGCTCGTTGGCACCCACTTGTAGAGTACCAGGGGTCCACTGGAGGAAGCCAGACAGGGTCCTGCAACTCCCTCAGGACTCCGCCCTCTCCGTAGAGAAATTCCTGCCTCGGTCTAAGGCGTTTGATTGGGCAGTGGCTCCACCCTGATATCTGTCAGGCCGGACCCGGAGCTGCTGACGTGTGGAGGAGTCTCActtctaaagaaaaaaaggccTGGAACACGGTTCTGTTCAACCTGTGCCTCTGGAAGCCCTTCCTTGCATGGGAACACTGATTGTTTCAGCTGCATGTTGAGTGGTCACATACTGTATGgttatttttacacaaaatatggtgatatgaaaagagaaaaagggtgTCCttagtaatgttttatttatttatttatttatttattattatttttttaagtgttaacAATGTTACACTGGTAATATACATGCTTAGGTTCTATATACACATTTCACTACCACTTTTTACGAGTATTAATTTGGGCTGTTATGTTATGACCTTGTTTAGGTCAAGccataacataataaaataacatctgTGCCCTCCCAGTGTTGCGTTCCCCAATAGAACGTAAACCAGTTGCAATGATAAGACAtgttaattgattttaattttaaggcttcaaaaatatccagtataaagaataaatggaaatagtgtaaaaaggggaaaataataaaaaaaaaatcacatttaaggcatttagcaAAGGCAAAAGTGACTTACAGGGTTATTTCTTTTACAGAAGTGGGCCAATATAGTgttgggagtcttgcccaaggactcttaagGGTGTAGTGCAGCATTCATTCACCCTGACTGGAAATGAACcctagtctcccacatgatgtggtagctcatcctgtggcaggtagtggtgttatccactgcaccacaagagattaaaaatataaaggataaaaaacataaaggataaaaaatcacaattaaataaagtttaccCTATTCCGCCCATCAAACTAAGATAACAAACAAACCTGATGAGCCACCACTTTTGGATCAAATTTAAGGTATAGGCTACTAAAACAACAACTCAACAATACAAACATAGCCATTCTTATGATAACACCAATAAACACAACGATAACCTCTAAGCTGTTAACAATCACATCATTAATCCTTACCAAAAtatagctagttagctctttttaAGCGCTATAGGAGGAAtaattgttaaataataaataataaatggttaaaaacatggTTGCTCCCAaaaggaagtgtcagattgcaatACAATTTggaaagaagacaaaaaaaacaatataataagataacaatataacaaaagATAACAAGATAACAGTAAATTATTACAATTTAGACTGTTGTGGGCAACTTTTGGTCATATACATTGAGCTACACATGCAGACGTAGTGTGTAAGGCAGCATTTAAGAcctctcagcatggagttgtagaggttcctaatggtgtcccgCAGTAATCCACCATCCAGTTGAAATATTCACAGACTAGGGCTGGATTGTTAATAGCATATCCAACatatccaatagcatcccataTATTTTTAGTCGGACGCAGGTTTGGACATAGTATCTGCGTCCTCAAGGCATTTTTTGAGATatcagcagtgtgtggatgagcattatcctgttggaatagtgcacaAGATTGTTGACTCATAAAGCGTGGGACCaatggttgcaggacctcattaacataacgttgggctgtcaaagtgcctgtaataaagagcaaaggtgatctggcatttTACAAAACAGGATATTAGTGATACAATATCACAGATCTTGTCTTTAATTCATTGGTCATCATCTCCACGATGACAAAAGTGGGAGTTACTCCATGATGGTCTGGCGTGACAACCCACCAAGTTGCATTCCTgttgattatattattatgagTATATATTGGAGACCAATGGCAAATAAGCATCTACGTTAAAGAAAAGAACaggtatttaaaaataaatcacatataGTTTACTTGCTCAAACTGGCAGTATATCCTCCtgtttcatgtttaaaaaataagaaaaagaaaattttaGAACCTAAACATTTCTATTACAGTGTAGTAGCTAGTCTCAAATGTAATAGACCCCtccccttcacacacacaaaacaaacaaaaaaaaaaactgatgaccACCAATCAGGCAGGGTGATGAGGGAAAGAGTGAGGGCTAGAATACGTCTCATCTGATGCTCATGTAGTCTGCTATTGCATCATTTCCAACTACTGGCTCAGAACAGCTCAGTCAGAACTCTACCACAAGCTCACTTTTGCACTGGAATTAGtgctcttataaaaaaaaaacattctaggTCACGAAGAGCATTTGTATGGGTGTCTAtaagctttatttaattaagcgtctctttttttcagtatagTCTTGGTTCCTGTTTCTTGAATGGATATtgtagtgtgtgttattgtgtcaTTCGTAGCTCTTGAGGACATATTTTTCCCCGGACATCATTCCTCTCATTTTTCTTTACGCAAAAGTGCAtgaatgtgtgttttggtgGGGTACAGTCTGAAACAGTTTTGTCATGAAAATAATGTGTGAATTCCGTCATGAAACTGTTGCTGCCATTTGCTGA

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211658 lncRNA upstream 71761 4550240 ~ 4550867 (+) True G156107
TU211645 lncRNA upstream 108923 4512820 ~ 4513705 (+) True G156095
TU211646 lncRNA upstream 137987 4484390 ~ 4484641 (+) True G156096
TU211630 lncRNA upstream 252523 4369730 ~ 4370105 (+) True G156080
TU211616 lncRNA upstream 352920 4269505 ~ 4269708 (+) True G156066
TU211673 lncRNA downstream 10338 4647628 ~ 4648023 (+) True G156121
TU211712 lncRNA downstream 230800 4868090 ~ 4868355 (+) True G156151
TU211714 lncRNA downstream 251306 4888596 ~ 4889001 (+) True G156153
TU211718 lncRNA downstream 315784 4953074 ~ 4953274 (+) True G156157
TU211726 lncRNA downstream 374536 5011826 ~ 5012075 (+) True G156165
XM_022679964.1 mRNA upstream 112088 4296319 ~ 4510540 (+) True LOC103029469
XM_022679496.1 mRNA upstream 499148 4008326 ~ 4123480 (+) True LOC103036857
XM_022679495.1 mRNA upstream 499148 4008504 ~ 4123480 (+) False LOC103036857
XM_022679497.1 mRNA upstream 499807 4008326 ~ 4122821 (+) False LOC103036857
XM_022679498.1 mRNA upstream 623166 3977752 ~ 3999462 (+) True LOC103036562
XM_022679967.1 mRNA downstream 40913 4678203 ~ 4738405 (+) True LOC103037478
XM_007243993.2 mRNA downstream 278938 4916228 ~ 4920871 (+) True LOC103030327
XM_007244015.3 mRNA downstream 884396 5521686 ~ 5524043 (+) True LOC103036856
XM_007244014.3 mRNA downstream 899444 5536734 ~ 5597788 (+) True cdyl2
XM_007244011.2 mRNA downstream 975671 5612961 ~ 5619291 (+) True cenpn
TU211262 other upstream 1867516 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 3353249 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 3354433 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 3354433 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 3407965 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 519864 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 2735086 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 2750212 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 2963277 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 3932640 8569930 ~ 8570877 (+) True G157055

Expression Profile