RNA id: TU211673


Basic Information

Item Value
RNA id TU211673
length 396
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G156121
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4647628 ~ 4648023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgctacctcccggccgctgcgctcctccaatgaacgtcgcctcgctttgccaaacattcacacaaagcaatccagactgttctcatacagagttccccaatggtggaacaaactaccctccactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcttaacacctctaacacactaactacttctaacctcatttccttcttcccctccttcactcctctatcctattattcccctttgacctccttttatccctatccaaagatgtttttcctttaaacttattttacattgtacttgactattgtaagtcgctttggacaaaagcgtctgccaaatgtaatgtaatgtaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211670 lncRNA upstream 10338 4622628 ~ 4637290 (+) True LOC103030011
TU211658 lncRNA upstream 96761 4550240 ~ 4550867 (+) True G156107
TU211645 lncRNA upstream 133923 4512820 ~ 4513705 (+) True G156095
TU211646 lncRNA upstream 162987 4484390 ~ 4484641 (+) True G156096
TU211630 lncRNA upstream 277523 4369730 ~ 4370105 (+) True G156080
TU211712 lncRNA downstream 220067 4868090 ~ 4868355 (+) True G156151
TU211714 lncRNA downstream 240573 4888596 ~ 4889001 (+) True G156153
TU211718 lncRNA downstream 305051 4953074 ~ 4953274 (+) True G156157
TU211726 lncRNA downstream 363803 5011826 ~ 5012075 (+) True G156165
TU211746 lncRNA downstream 472981 5121004 ~ 5121206 (+) True G156184
XM_022679965.1 mRNA upstream 13928 4575668 ~ 4633700 (+) False LOC103030011
XM_022679964.1 mRNA upstream 137088 4296319 ~ 4510540 (+) True LOC103029469
XM_022679496.1 mRNA upstream 524148 4008326 ~ 4123480 (+) True LOC103036857
XM_022679495.1 mRNA upstream 524148 4008504 ~ 4123480 (+) False LOC103036857
XM_022679497.1 mRNA upstream 524807 4008326 ~ 4122821 (+) False LOC103036857
XM_022679967.1 mRNA downstream 30180 4678203 ~ 4738405 (+) True LOC103037478
XM_007243993.2 mRNA downstream 268205 4916228 ~ 4920871 (+) True LOC103030327
XM_007244015.3 mRNA downstream 873663 5521686 ~ 5524043 (+) True LOC103036856
XM_007244014.3 mRNA downstream 888711 5536734 ~ 5597788 (+) True cdyl2
XM_007244011.2 mRNA downstream 964938 5612961 ~ 5619291 (+) True cenpn
TU211262 other upstream 1892516 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 3378249 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 3379433 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 3379433 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 3432965 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 509131 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 2724353 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 2739479 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 2952544 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 3921907 8569930 ~ 8570877 (+) True G157055

Expression Profile