RNA id: TU211712


Basic Information

Item Value
RNA id TU211712
length 266
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G156151
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 4868090 ~ 4868355 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aacaaattctaacaaaccctaaaactagccctgaactaatagagtttggaaatgatagttattggctgatcaggcacatcagggcagggcattatatatatatatatgtagatttttctcaaaccctgaatatctatctagctaattctaaagttaagctaactgagtcacaagctggattttattaaacacacagtgggtttaatttatgttttgattcagagaagagtctttttaaccagctatcagaaacaatctcatcacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211673 lncRNA upstream 220067 4647628 ~ 4648023 (+) True G156121
TU211670 lncRNA upstream 230800 4622628 ~ 4637290 (+) True LOC103030011
TU211658 lncRNA upstream 317223 4550240 ~ 4550867 (+) True G156107
TU211645 lncRNA upstream 354385 4512820 ~ 4513705 (+) True G156095
TU211646 lncRNA upstream 383449 4484390 ~ 4484641 (+) True G156096
TU211714 lncRNA downstream 20241 4888596 ~ 4889001 (+) True G156153
TU211718 lncRNA downstream 84719 4953074 ~ 4953274 (+) True G156157
TU211726 lncRNA downstream 143471 5011826 ~ 5012075 (+) True G156165
TU211746 lncRNA downstream 252649 5121004 ~ 5121206 (+) True G156184
TU211751 lncRNA downstream 314179 5182534 ~ 5183300 (+) True G156189
XM_022679967.1 mRNA upstream 129685 4678203 ~ 4738405 (+) True LOC103037478
XM_022679965.1 mRNA upstream 234390 4575668 ~ 4633700 (+) False LOC103030011
XM_022679964.1 mRNA upstream 357550 4296319 ~ 4510540 (+) True LOC103029469
XM_022679496.1 mRNA upstream 744610 4008326 ~ 4123480 (+) True LOC103036857
XM_007243993.2 mRNA downstream 47873 4916228 ~ 4920871 (+) True LOC103030327
XM_007244015.3 mRNA downstream 653331 5521686 ~ 5524043 (+) True LOC103036856
XM_007244014.3 mRNA downstream 668379 5536734 ~ 5597788 (+) True cdyl2
XM_007244011.2 mRNA downstream 744606 5612961 ~ 5619291 (+) True cenpn
XM_007244010.3 mRNA downstream 752865 5621220 ~ 5630190 (+) True atmin
TU211262 other upstream 2112978 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 3598711 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 3599895 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 3599895 1265820 ~ 1268195 (+) False G155491
TU210867 other upstream 3653427 1203741 ~ 1214663 (+) False LOC103036073
TU211750 other downstream 288799 5157154 ~ 5157400 (+) True G156188
TU212485 other downstream 2504021 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 2519147 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 2732212 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 3701575 8569930 ~ 8570877 (+) True G157055

Expression Profile