RNA id: TU211751


Basic Information

Item Value
RNA id TU211751
length 337
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G156189
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 5182534 ~ 5183300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactttacttggatggtccattttatggtcttgttgatgctcaactgacattcaactaacactgaattgaatgtccattcaatttaacttaaccctatgttgaatgtaaatgattcaaaatagaacctaaccctacacctaaccctaaccttaacccttaatcaaccataaaatcaaaccctacacctaaccctaaccttaaccttaacctaaacttaaaatctaaccctacacctaaccctaaccctaacattaacctaagcttaaaatctaaccctaaacccaatcctaaaatattaagataagcgtttgggttagagttgaatgtagggttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211746 lncRNA upstream 61328 5121004 ~ 5121206 (+) True G156184
TU211726 lncRNA upstream 170459 5011826 ~ 5012075 (+) True G156165
TU211718 lncRNA upstream 229260 4953074 ~ 4953274 (+) True G156157
TU211714 lncRNA upstream 293533 4888596 ~ 4889001 (+) True G156153
TU211712 lncRNA upstream 314179 4868090 ~ 4868355 (+) True G156151
TU211752 lncRNA downstream 27655 5210955 ~ 5211434 (+) True G156190
TU211774 lncRNA downstream 143462 5326762 ~ 5326971 (+) True G156202
TU211776 lncRNA downstream 258438 5441738 ~ 5441999 (+) True G156204
TU211781 lncRNA downstream 301464 5484764 ~ 5485045 (+) True G156209
TU211788 lncRNA downstream 417805 5601105 ~ 5601659 (+) True G156215
XM_007243993.2 mRNA upstream 261663 4916228 ~ 4920871 (+) True LOC103030327
XM_022679967.1 mRNA upstream 444129 4678203 ~ 4738405 (+) True LOC103037478
XM_022679965.1 mRNA upstream 548834 4575668 ~ 4633700 (+) False LOC103030011
XM_022679964.1 mRNA upstream 671994 4296319 ~ 4510540 (+) True LOC103029469
XM_022679495.1 mRNA upstream 1059054 4008504 ~ 4123480 (+) False LOC103036857
XM_007244015.3 mRNA downstream 338386 5521686 ~ 5524043 (+) True LOC103036856
XM_007244014.3 mRNA downstream 353434 5536734 ~ 5597788 (+) True cdyl2
XM_007244011.2 mRNA downstream 429661 5612961 ~ 5619291 (+) True cenpn
XM_007244010.3 mRNA downstream 437920 5621220 ~ 5630190 (+) True atmin
XM_022679500.1 mRNA downstream 455948 5639248 ~ 5641113 (+) True LOC103034771
TU211750 other upstream 25134 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 2427422 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 3913155 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 3914339 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 3914339 1265820 ~ 1268195 (+) False G155491
TU212485 other downstream 2189076 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 2204202 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 2417267 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 3386630 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 4757529 9940829 ~ 9941805 (+) True G157383

Expression Profile