RNA id: TU211752


Basic Information

Item Value
RNA id TU211752
length 480
lncRNA type inter_gene
GC content 0.68
exon number 1
gene id G156190
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 5210955 ~ 5211434 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtagacgttctaaggggtcccgccagccgaagGAGGatcccttttccggggaggatttgctTGGGGGGGCGCTGCGGGTGTGTGCGGGGAGCCTCGGGACTCGTCTCAGTTTGGGTGAAACCTACGAGTACCCGAGGCTCGTGGAGCGGAAGCCGTGGGACTTCCTCGgttgcgctcccagcagctccgaggaggaagaggagctctaccccgcaccagcccgtactccattgccgtttcccccaggggctGTACTCTACCCGCGCTCGGTGACTTTCCCGGCCGAGATGCcacgctccgagaatcccgcggccgagacgccgcactccgagaatcccgcgaccGAGACACCACGCTCCgagaagcacgcggctgaggctccacgccccgtgactcccgtggctcagccgctccccgagacttcagcggcggccgcgccgcgctcacagactgcagcggcggcagcgccgctctccgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211751 lncRNA upstream 27655 5182534 ~ 5183300 (+) True G156189
TU211746 lncRNA upstream 89749 5121004 ~ 5121206 (+) True G156184
TU211726 lncRNA upstream 198880 5011826 ~ 5012075 (+) True G156165
TU211718 lncRNA upstream 257681 4953074 ~ 4953274 (+) True G156157
TU211714 lncRNA upstream 321954 4888596 ~ 4889001 (+) True G156153
TU211774 lncRNA downstream 115328 5326762 ~ 5326971 (+) True G156202
TU211776 lncRNA downstream 230304 5441738 ~ 5441999 (+) True G156204
TU211781 lncRNA downstream 273330 5484764 ~ 5485045 (+) True G156209
TU211788 lncRNA downstream 389671 5601105 ~ 5601659 (+) True G156215
TU211802 lncRNA downstream 390898 5602332 ~ 5611273 (+) True G156225
XM_007243993.2 mRNA upstream 290084 4916228 ~ 4920871 (+) True LOC103030327
XM_022679967.1 mRNA upstream 472550 4678203 ~ 4738405 (+) True LOC103037478
XM_022679965.1 mRNA upstream 577255 4575668 ~ 4633700 (+) False LOC103030011
XM_022679964.1 mRNA upstream 700415 4296319 ~ 4510540 (+) True LOC103029469
XM_022679495.1 mRNA upstream 1087475 4008504 ~ 4123480 (+) False LOC103036857
XM_007244015.3 mRNA downstream 310252 5521686 ~ 5524043 (+) True LOC103036856
XM_007244014.3 mRNA downstream 325300 5536734 ~ 5597788 (+) True cdyl2
XM_007244011.2 mRNA downstream 401527 5612961 ~ 5619291 (+) True cenpn
XM_007244010.3 mRNA downstream 409786 5621220 ~ 5630190 (+) True atmin
XM_022679500.1 mRNA downstream 427814 5639248 ~ 5641113 (+) True LOC103034771
TU211750 other upstream 53555 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 2455843 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 3941576 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 2160942 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 2176068 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 2389133 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 3358496 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 4729395 9940829 ~ 9941805 (+) True G157383

Expression Profile