RNA id: TU211922


Basic Information

Item Value
RNA id TU211922
length 1569
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G156331
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6050480 ~ 6052382 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAAAGTAGCATTTGTATAGTTTTCTGTACACAACCTTAAAACATttactcattcattgtttctaatTACTTTGACTTTTAGCACTGCCAGCCTTATTTACTGTAAGATTTCCATGCTAAGCTATATTAGaacaggaggaaaaaaaaaaagcacaaaaaggtGAGCAAAGTTAAGAAGGATTGCAACCACCATCTTAACAACCCTGGACATAAAAGCATCCCCAATGTGTTTTGACAAAATCTGCATCCATTGTCTTTTGTTGGTTGTCCATCCAGTTTGACAAAGCAGAGAAATCTCAGCGTACAGTGAGGTGGTATCTGTCCTAATGGCACGAGCACAGCATGGGTAGGATTTCATGACAGTCACTTCTTTCAAAGCATGAAATATTAATTCCTTCTGGTCAGGATCTGTAGAGCTGCAGTCCAAAGTGTTACCTGCACTGCACATAATGTTAGTGGTCCTAATAGTCCTGATGTGACACCGTTGCTTAGTAATCCTGCGACTTGCCTGAGCCAGAGCCTGGCTGGAGGTTGGAGCGCAGTTTGTACATGTAATTCAAAGAGTCCAGCAGAAAGCTGCGTGTGGTATTGATCTCCATCAATGTAAGGTTATCCAGCTAGtggagacagaaagagggacAGCATGTGTACACACTGGTttatgtctgaaaaaaaaatagataaaggcACAGACAAAACTACTAAACTGGGTTTTGTCCATGTTTTATAGATAACTGTGCATTTCATATAGTGGAAGAAACCACATAAATAAGTCTGTCTGAGATACTCatcaaattaaatgatttttgaTGGCAAGTGTTTCATAAGTACGcatattacagaaaaaaaaaattattttagtctGCTTTTTACTCACCTTTGACCATGAACATATTCAAATTGGTTAACATAGTGTATGTACAGTTTGAGAATTAGACTTGCAGCCACCCAATACTGGAACCTAGAGACTCCTTATACCACAAGCTATTTTATACACTGGATGCACGCATGCAGTTTGCCAACTGTAGAAGTGTGCTCCTATTGCAGTGACTGAATCAGCCTCACACCAAATTAAGTATTTATGTCAGTTTTATCTAGTTTACCCTGGCATGAGCCTCCTGTTGGCTGATGAAACTGTCAGCAGACAGGCGCAGTTTTGCAATGCGGGTGTCCCAAATATCCTTCACCAATGTCCGGATTTCATCAGCTTTGGGGATGTTGTCTGCAGCACTGCATAGAGGATTtGGTTTAGTAGCAATTTGGTCAATTCCATGTAATAAGCACTGGGGATGGGAGTGAAGGTGTCCTCTTTTCTCTCCTGCTCCCTGATTTCTTCCAGTTTATCTAAAAGGCACAGAAAATTGAGAGATTACATAAAGCTATGGGAAACATGATCAAAACACAACAGGCTGTGAAGCTGTGAAAGGCTGTCAGGTAAATGTATGTTAATAGATCCCAAGCAAAATTTAAACAGGATCCAATTTGTGTTAGGTAAATGTTATTGATTGTTTATATTCATGTGAAACATAACTtcataagtgaaaaaaaaacatgcaaaaatggGCATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211812 lncRNA upstream 401906 5645881 ~ 5648574 (+) True G156233
TU211802 lncRNA upstream 439207 5602332 ~ 5611273 (+) True G156225
TU211788 lncRNA upstream 448821 5601105 ~ 5601659 (+) True G156215
TU211781 lncRNA upstream 565435 5484764 ~ 5485045 (+) True G156209
TU211776 lncRNA upstream 608481 5441738 ~ 5441999 (+) True G156204
TU211916 lncRNA downstream 4287 6056669 ~ 6061997 (+) True G156326
TU211931 lncRNA downstream 64763 6117145 ~ 6117589 (+) True G156340
TU212013 lncRNA downstream 254343 6306725 ~ 6307420 (+) True G156395
TU212015 lncRNA downstream 255851 6308233 ~ 6308561 (+) True G156397
TU212017 lncRNA downstream 256990 6309372 ~ 6309620 (+) True G156399
XM_007244000.3 mRNA upstream 7977 5703096 ~ 6042503 (+) True gse1
XM_015604469.2 mRNA upstream 7977 5703096 ~ 6042503 (+) False gse1
XM_007244001.3 mRNA upstream 7977 5703122 ~ 6042503 (+) False gse1
XM_022679500.1 mRNA upstream 409367 5639248 ~ 5641113 (+) True LOC103034771
XM_007244010.3 mRNA upstream 420290 5621220 ~ 5630190 (+) True atmin
XM_007243996.3 mRNA downstream 10870 6063252 ~ 6065533 (+) True LOC103031281
XM_007243995.3 mRNA downstream 14833 6067215 ~ 6095668 (+) True LOC103030962
XM_007243994.3 mRNA downstream 48371 6100753 ~ 6111006 (+) True irf8
XM_007244016.3 mRNA downstream 249466 6301848 ~ 6305572 (+) True foxf1
XM_022679503.1 mRNA downstream 272439 6324821 ~ 6363149 (+) False dbndd1
TU211750 other upstream 893080 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 3295368 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 4781101 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 1319994 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 1335120 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 1548185 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 2517548 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3888447 9940829 ~ 9941805 (+) True G157383

Expression Profile