RNA id: TU212017


Basic Information

Item Value
RNA id TU212017
length 249
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G156399
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6309372 ~ 6309620 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ataatattatatttgtaatatagacctaatttttaagaaaatggGTGTTGGGTCCCTTTTGACACATTTTGCCAGcgcgttaaaaaaaaacaaaaaaaaactgatagaTTGTTTTTCTAAAATTGATCATGTGTGTCCAACCATTTTACTTTTGAGCGCACATAAACCGAATACATCAAACAGTAAGGCTGTATACTTAACTATGACTTAAGACTTGCTAAAGATAAAATGTTGGGGAGATGACAAAAT

Function

GO: NA

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212015 lncRNA upstream 811 6308233 ~ 6308561 (+) True G156397
TU212013 lncRNA upstream 1952 6306725 ~ 6307420 (+) True G156395
TU211931 lncRNA upstream 191783 6117145 ~ 6117589 (+) True G156340
TU211916 lncRNA upstream 247375 6056669 ~ 6061997 (+) True G156326
TU211922 lncRNA upstream 256990 6050480 ~ 6052382 (+) True G156331
TU212022 lncRNA downstream 4332 6313952 ~ 6317024 (+) True G156402
TU212040 lncRNA downstream 73647 6383267 ~ 6384043 (+) True G156419
TU212058 lncRNA downstream 100001 6409621 ~ 6412224 (+) True G156431
TU212064 lncRNA downstream 118444 6428064 ~ 6428293 (+) True G156434
TU212065 lncRNA downstream 120403 6430023 ~ 6430626 (+) True G156435
XM_007244016.3 mRNA upstream 3800 6301848 ~ 6305572 (+) True foxf1
XM_007243994.3 mRNA upstream 198366 6100753 ~ 6111006 (+) True irf8
XM_007243995.3 mRNA upstream 213704 6067215 ~ 6095668 (+) True LOC103030962
XM_007243996.3 mRNA upstream 243839 6063252 ~ 6065533 (+) True LOC103031281
XM_007244001.3 mRNA upstream 266869 5703122 ~ 6042503 (+) False gse1
XM_022679503.1 mRNA downstream 15201 6324821 ~ 6363149 (+) False dbndd1
XM_015604453.2 mRNA downstream 15204 6324824 ~ 6363149 (+) True dbndd1
XM_022679507.1 mRNA downstream 173199 6482819 ~ 6488287 (+) True gas8
XM_007244032.3 mRNA downstream 421550 6731170 ~ 6759468 (+) True LOC103042367
XM_007244034.3 mRNA downstream 499315 6808935 ~ 6817496 (+) True zdhhc7
TU211750 other upstream 1151972 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 3554260 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 5039993 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 1062756 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 1077882 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 1290947 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 2260310 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3631209 9940829 ~ 9941805 (+) True G157383

Expression Profile