RNA id: TU212066


Basic Information

Item Value
RNA id TU212066
length 466
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G156436
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6432397 ~ 6432862 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGGGCAGAGAGGGGGGCCGTGCGCAGGATCGgctggtgtgtgtgagatggcCAACATTCCGCCCATTCTTTCCTATGGGGAAAGTTCGTACGATAATTTTACGAAAACCGTAAATCGTATCGGTGAGATCAGCATATCGTCTGAAACGTCTCTGCAAGTTCTGTATGTCTTGTGAATTTCGTGGTTCTAGCTTGAAAATTGTGACTTTTAgagcagtttgaaaaaagtgTGAATGGAAGTCTATGGGAAAAAATCTGACTTTGGCGGACCACCGATCGGACCCTGGTGGTCCGATCACTTAGAAAAGCACAAGCACAAGCTCTTTTCCACACATCTTGTGAAGTTTGGTGGTTCTAGCTTGAAAACTGTAGGAGGAGAAACTGTTTATaaaaagtttatagaataataataataataataataataataataataagattacgaagaacaataagttggctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212065 lncRNA upstream 1771 6430023 ~ 6430626 (+) True G156435
TU212064 lncRNA upstream 4104 6428064 ~ 6428293 (+) True G156434
TU212058 lncRNA upstream 20173 6409621 ~ 6412224 (+) True G156431
TU212040 lncRNA upstream 48354 6383267 ~ 6384043 (+) True G156419
TU212022 lncRNA upstream 115373 6313952 ~ 6317024 (+) True G156402
TU212071 lncRNA downstream 8189 6441051 ~ 6441277 (+) True G156438
TU212086 lncRNA downstream 66989 6499851 ~ 6501174 (+) True G156451
TU212165 lncRNA downstream 238059 6670921 ~ 6671194 (+) True G156499
TU212190 lncRNA downstream 336080 6768942 ~ 6774732 (+) True G156523
TU212237 lncRNA downstream 435398 6868260 ~ 6869564 (+) True G156562
XM_022679503.1 mRNA upstream 69248 6324821 ~ 6363149 (+) False dbndd1
XM_015604453.2 mRNA upstream 69248 6324824 ~ 6363149 (+) True dbndd1
XM_007244016.3 mRNA upstream 126825 6301848 ~ 6305572 (+) True foxf1
XM_007243994.3 mRNA upstream 321391 6100753 ~ 6111006 (+) True irf8
XM_007243995.3 mRNA upstream 336729 6067215 ~ 6095668 (+) True LOC103030962
XM_022679507.1 mRNA downstream 49957 6482819 ~ 6488287 (+) True gas8
XM_007244032.3 mRNA downstream 298308 6731170 ~ 6759468 (+) True LOC103042367
XM_007244034.3 mRNA downstream 376073 6808935 ~ 6817496 (+) True zdhhc7
XM_015604486.2 mRNA downstream 376305 6809167 ~ 6817496 (+) False zdhhc7
XM_007244039.3 mRNA downstream 390767 6823629 ~ 6828644 (+) True cog8
TU211750 other upstream 1274997 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 3677285 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 5163018 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 939514 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 954640 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 1167705 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 2137068 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3507967 9940829 ~ 9941805 (+) True G157383

Expression Profile