RNA id: TU212165


Basic Information

Item Value
RNA id TU212165
length 274
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G156499
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 6670921 ~ 6671194 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctttccgcgcttccgcttacgctcgcaccgtttgcgatggcacttccgctgggctccggcgtcaggaaacaccgcgggctggcggcctgggtctcttagcaggctaagctcaagtagcgtctgcagaacctcgtccggtagcgtgttttctggctggtttctccactgtagcagggtctggcggtggtagaacatgtgcacgggtgttccgatgcacatatttgcaggaaataaacggaaaaaacgacaaatagtaacacaaaagcacca

Function

GO: NA

KEGG:

id description
ko00380 Tryptophan metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212086 lncRNA upstream 169747 6499851 ~ 6501174 (+) True G156451
TU212071 lncRNA upstream 229644 6441051 ~ 6441277 (+) True G156438
TU212066 lncRNA upstream 238059 6432397 ~ 6432862 (+) True G156436
TU212069 lncRNA upstream 238095 6432397 ~ 6432826 (+) False G156436
TU212065 lncRNA upstream 240295 6430023 ~ 6430626 (+) True G156435
TU212190 lncRNA downstream 97748 6768942 ~ 6774732 (+) True G156523
TU212237 lncRNA downstream 197066 6868260 ~ 6869564 (+) True G156562
TU212321 lncRNA downstream 355404 7026598 ~ 7030708 (+) True G156623
TU212379 lncRNA downstream 497014 7168208 ~ 7171625 (+) False ptprq
TU212428 lncRNA downstream 574570 7245764 ~ 7248460 (+) True G156697
XM_022679507.1 mRNA upstream 182634 6482819 ~ 6488287 (+) True gas8
XM_022679503.1 mRNA upstream 307772 6324821 ~ 6363149 (+) False dbndd1
XM_015604453.2 mRNA upstream 307772 6324824 ~ 6363149 (+) True dbndd1
XM_007244016.3 mRNA upstream 365349 6301848 ~ 6305572 (+) True foxf1
XM_007243994.3 mRNA upstream 559915 6100753 ~ 6111006 (+) True irf8
XM_007244032.3 mRNA downstream 59976 6731170 ~ 6759468 (+) True LOC103042367
XM_007244034.3 mRNA downstream 137741 6808935 ~ 6817496 (+) True zdhhc7
XM_015604486.2 mRNA downstream 137973 6809167 ~ 6817496 (+) False zdhhc7
XM_007244039.3 mRNA downstream 152435 6823629 ~ 6828644 (+) True cog8
XM_007244036.3 mRNA downstream 167684 6838878 ~ 6858524 (+) True wdr59
TU211750 other upstream 1513521 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 3915809 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 5401542 1265820 ~ 1269379 (+) False G155491
TU212485 other downstream 701182 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other downstream 716308 7387502 ~ 7404556 (+) False LOC111194759
TU212659 other downstream 929373 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 1898736 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 3269635 9940829 ~ 9941805 (+) True G157383

Expression Profile