RNA id: TU212484


Basic Information

Item Value
RNA id TU212484
length 2345
lncRNA type read_through
GC content 0.37
exon number 2
gene id G156731
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7351997 ~ 7412688 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGTGGTATCtttgGTTTCTCATAGTTTgtgcagtgtgtatgtgtggtatgTTTGGTGCAGTGAGTgtgcatgaataaaaaacacaacaagagCGTTAGATAAGAATAAGGCATGTTATAAGACATTAATGTCAAAGAGTAAAACAAATATAAGGCCATATTTGTATAAAGGTGTAATGGTAAGCTGaagcgtgtgtgtctgtgtgtgtacacgGATCCTATTCCGCTCTAAACCAGTCAGACCAGTTACGTGATGCAAATAAATTTACAGTTCATGCAGAAAGGCGCTTGAACAGGTgttgtgtgtgcatgcacacatTTGTAATGCCACAGCCTTCTTAATATTTACAACATGCCCTAGAGCAAAGAAAGGAATCGGATCTATATCCTACATCCACACCCATTGTGGCACTCCCAGCTCCCGTCTTCTCCTTCACAGATCTCTGAGTGTGGCCTTTAGCTGCATCCATAACACATTAGcgtttaattaaaacatttaaaaagttccACTCACTCCATATGtacactatatgaacaaaagtataGGAATACCAGTGCATTcattgatttttagtttttaggtaTTAAGGTATtaattgtctctactgtccaattAAGATTGTTGTGAAGTCGGAATGTTGGATCACCTTTAGACCTgtcattataattatatttgccTACCTCGATATTaccaattatatatttttcaaggGACAGCCCATTAACGCGAGTGAGCTGGTATGTTGACCTTATTAAAAACAGCGATccaatgaatgtatttattagattttattttataaatttatgtaggctatttaaatttttttttatacctgaAAACTCTTATGAATTGAAAGTTAAGcatactttttaaatgtgtaaatgtgttattatgccactgtattattattattattataagatggCTTAAACAGCTCTTAAAAATAACCACTCACCACATTCCCAACTCTTCAACCCTACAGCTCACCCATaatcaaaagtattggatggagaaCCATCATTGCAGacacaatacagctctggaaaaaataagagaccacttaaaaatgagtttcttagattttttgtcaaattaaaaacctctggaatatgaacaagaggaagatggatgaaaccgagctaaactgcttgcatttttgcaccaggagtggcataaaattgtgaagatgcatgaaaactctgattaaaaaggttattccacaaaatattgatttctgtactttatgaacatgaaattgttttctttgctttatttgaggtctgaaagctctgcaccttttttgtttgtttctgcaaataaatgatctaaatgacaaaatgttatttggaatttgggagaaatgttgtctgtagtttatagaattaaacaacaatgtttattttactcaaaaataaacctataaatagcaaaatcagagaaaccgattcagaaactggagtggtcttttaattttttccagagctgtatgttttataGCTCCACAGCAATTTACATGCCTACCTtgtattaggcatggtgccagtatacaggttcatgtttatctgctctagagAGTCTTATTCTTTTGGCAACAcgtctctacagggactagacaaccTGCACATTTGTGACAGGTGACAGCATTGGGTACAATTACagtaaagtagctgaatgcattcattacaaGGGGTGTCCACAAGCTTTTGCACATAtagtgtacttaagtactagTTAAGTAATCTCTAATACTTAACTGTGTTCCTGTGGTTTCAGATGTTTGCAACTGTTTGCAGCTGTTTGCTGTAATGTAATAGGCTGAAGTACAATACATTGCATAGTTAATAACAGCAGTAGCATCTTGTCAAGTGAATTCGAGTCCAGCATGCTTGTACATTGGCAAACTTAATGAGATACTGATGCAATGTCCACTGCActgttcagctaatgccacttACACAAACACTGACATTCTATTCAGTCAAAGGTATGCATAACtgtatttatatgtgtgtgtgtgtgtgtttgactgtgtgtgtgtttttctgtgtaatcAATCCAGCATCTCCTTGGCTTCAGTTCTCgagcatgtatgtgtgtgtgtgtgtgtgtgttactgcgTCAGAGCAGATATCAGATCGTCCAGTGGCGCAGTCTCTGAGGGTTCCAGCAGTCTGAAGGTGTGACTGAACGTGATGAAGTGTGTGAACAGAGTGTTAAGGTGTGGGTGTATCTCCATGGTGATGGCGTCCCGATAGTGTGCGCTGTACAGGTGAGCGAATGTtcggaacagcagcaggaacaCCTTCTGGACCAGAAACATGAATCCAGGTGGAAACTGTGCAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212428 lncRNA upstream 103537 7245764 ~ 7248460 (+) True G156697
TU212379 lncRNA upstream 180372 7168208 ~ 7171625 (+) False ptprq
TU212321 lncRNA upstream 321289 7026598 ~ 7030708 (+) True G156623
TU212237 lncRNA upstream 482433 6868260 ~ 6869564 (+) True G156562
TU212190 lncRNA upstream 577265 6768942 ~ 6774732 (+) True G156523
TU212487 lncRNA downstream 14137 7426825 ~ 7430581 (+) True LOC111194759
TU212636 lncRNA downstream 140965 7553653 ~ 7558957 (+) True G156824
TU212683 lncRNA downstream 339515 7752203 ~ 7755664 (+) True G156856
TU212684 lncRNA downstream 339644 7752332 ~ 7755664 (+) False G156856
TU212767 lncRNA downstream 424067 7836755 ~ 7844894 (+) False G156916
XM_022679522.1 mRNA upstream 36442 7274953 ~ 7315555 (+) True LOC103040627
XM_022679521.1 mRNA upstream 80086 7263863 ~ 7271911 (+) True fkbp4
XM_007244043.3 mRNA upstream 80086 7263865 ~ 7271911 (+) False fkbp4
XM_015604482.2 mRNA upstream 110015 7230927 ~ 7241982 (+) True washc1
XM_022679969.1 mRNA upstream 181115 7093507 ~ 7170882 (+) True ptprq
XM_007244067.3 mRNA downstream 33455 7446143 ~ 7454434 (+) True LOC103026191
XM_015604457.2 mRNA downstream 112437 7525125 ~ 7540255 (+) True LOC103026791
XM_015604459.2 mRNA downstream 112437 7525125 ~ 7540255 (+) False LOC103026791
XM_007244072.3 mRNA downstream 159463 7572151 ~ 7581205 (+) True LOC103028022
XM_022679539.1 mRNA downstream 201271 7613959 ~ 7655049 (+) True vwf
TU211750 other upstream 2194597 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4596885 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 6082618 1265820 ~ 1269379 (+) False G155491
TU212659 other downstream 187879 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 1157242 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2528141 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4949763 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 5322944 12735632 ~ 12740999 (+) False hsbp1

Expression Profile