RNA id: TU212485



Basic Information


Item Value
RNA id TU212485
length 2299
RNA type TUCP
GC content 0.41
exon number 6
gene id LOC111194759
representative False

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7372376 ~ 7431568 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AAACAATTTACACACTTTAGTATACAGGGAAAcaaaaagtttttattattttagtatacTGTGAATGTGATTCAATTACCTTATAAGTCTCTTATACATTTTGTTATACTGTGAATATACCAAAGCATGGCCTTATAAGATTTCATGGCCTTATTTGACTCTTAAATATCAGTATACAGAGAAGAGGTGATGCATGAAGGCTTTGCAAAAAATCTTTACACAACAGGATACAGTGACAATGTTACTAAATGGCCTTATAAAACAcattggtatacagtgaaaatgATGGTTTAATCAGTATGGCAGAGAAACACAAGGCTCTTAACATTAGATTGCTTATATCAGATTTGCAAGccctttctttttcctttaaatTGTATACAAGCTTTACTATAGATCAGAGACTTCTTTGAACAAACTCCATTCTGTGAGCGCTACATCACATATTGTGGTACTTCAGATACTGCTGATTGTGCAGATTGTGGTGCATGTTCACCAGGACAGCACTCCTGGACAGTACTTGTCAATAAGAGACTGGTAATATGGCTTCAGCTGTTCCACATCAGGCAGCTCTGTGCTTTTAGTGTATAAATCAAACTTGTAAACTCTTTGACCCAGGGCAGCATCTTCAGATCTTTCTCGTTGCACAGGTGCATGTAGTTTCCGTGAGAATGCCAGGGGTAGAACGAGTGGAACCGGATCATATACAGACCCTGAGAGAAATGTGAAAGACAGAGCATAGTTCATGCAGGTCGGTGTGGGTGATTTGACATACTGGTCCCTCACCCTTGTCTGGGTGTTCCCTGCGGATGCCCTCAGCAGTTTGGAAGGCATGAAAAGAGTTGGGGAAATCAACGTCAGGGTCGGATTCATCGATCAGCTGGTCCAGACAGTCAATGCTCTCCATCACAGTCATACGAGAGTGAGTACAGCCCGCCCATTCAGCtgGCTTCTGTTCTAAAGAAGAACAAAGCTAGGTTCCAGATTTTTCCTGGATGCTGTCAGCCAGCACTCCAGTGGATGTGTTTAATTcctgatttaacatcattaagctctgatttaccaaaccaggtccTGACATGTTGatgtaaagtttttatttttttattgttctaatATTAGTGATTTACTgagatttctctcttttttttttacaggtgtctaaaacttttgcacagtactgtacacacAGTGGTAGAAGGATCTGGCCCATATAGATGAGAATATAAATTTTATAGTGAAAAATGTGTGACATATACTCCTTTCGCAAGAGTATCAATCTAGTTTTAAGGGAGGTGGCTAGGCACCACTCGCCTGGTTCCTGTTGAGGACCTGATTATTTAGGCTGAAACTATTAACAAACGCAACTGAATAAAAGTGGCTTATGGGATCTAGCAGAAGTAAAAGCATATTTACGACAGCTGCAGTGAACCACACCCTTAATTCTCACTTTACTTGTCTTATTAGAGTTCTCTTTTGGAAGTACACTGGTCAGCATGGCTCTGAAGAAAAGGGAGGACCTCACAGCTGTGGGCCCTTAGCAACATTTCTATATTGCCACAGCAATAATGACAGCAAATGGAAGAATCCCAGACTTGTATTCGCTCGACAAGGCTGCATTCAGGCCAGCAGCTGCTGCTATGCAATGGTTCAGATTTCAAAACGGCCTGACTTCATAAGCTGGACTGAAATAAATGCTGGGCTCGGAGAAAATGTGTTAAAGAGGCGTTATATATTTCATAGGTGGAGCAGTGGTGGTCACGGAGATTCACAAGAACACTAGGGTGGCTCGGAAATACGTTTGATACATTGGACCATTACTACTTGGGTTTTCtcCTTTATTCTGCCGTCTGCTCCttaggaggaggtggaggagtaTCTGTGATGGACATCACTACAGTGCTTGCAGCCATACCACCTGATGTTTTGGAATCAGATTCGCTGGTGAAGAGTGCCTTCTCGTTTTTTGACTCCACACTCAGTTTGACTGCCTCTTTGCCACTACCAGTAGTGACAGTCTCCATGACAGTCTcgttcctctcctcctcttcttcactATCAGAATCACTAGAGCTGCTGTCAGACGCCACCAAAGGAGCTTTCCTcgacccacacacactccacacacatgCAGCTGATCCCTTTACTGAAACATTCAACATTCACAGTCAAACTCACACTGTTGTagcattatttttactattcaggttttaaaaacttaaaatataggAGGAAAAAGAACTCACCatctttgtctttgttttgttttcctggagTTTCTGAGTCTACTGGTGAGCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU212428 lncRNA upstream 123916 7245764 ~ 7248460 (+) True G156697
TU212379 lncRNA upstream 200751 7168208 ~ 7171625 (+) False ptprq
TU212321 lncRNA upstream 341668 7026598 ~ 7030708 (+) True G156623
TU212237 lncRNA upstream 502812 6868260 ~ 6869564 (+) True G156562
TU212190 lncRNA upstream 597644 6768942 ~ 6774732 (+) True G156523
TU212636 lncRNA downstream 122085 7553653 ~ 7558957 (+) True G156824
TU212683 lncRNA downstream 320635 7752203 ~ 7755664 (+) True G156856
TU212684 lncRNA downstream 320764 7752332 ~ 7755664 (+) False G156856
TU212767 lncRNA downstream 405187 7836755 ~ 7844894 (+) False G156916
TU212769 lncRNA downstream 405187 7836755 ~ 7841481 (+) True G156916
XM_022679529.1 mRNA upstream 481 7358284 ~ 7371895 (+) True LOC103040931
XM_022679528.1 mRNA upstream 481 7361055 ~ 7371895 (+) False LOC103040931
XM_022679530.1 mRNA upstream 481 7361055 ~ 7371895 (+) False LOC103040931
XM_007244053.3 mRNA upstream 14184 7324500 ~ 7358192 (+) True c2cd5
XM_007244056.3 mRNA upstream 14184 7324500 ~ 7358192 (+) False c2cd5
XM_007244067.3 mRNA downstream 14575 7446143 ~ 7454434 (+) True LOC103026191
XM_015604457.2 mRNA downstream 93557 7525125 ~ 7540255 (+) True LOC103026791
XM_015604459.2 mRNA downstream 93557 7525125 ~ 7540255 (+) False LOC103026791
XM_007244072.3 mRNA downstream 140583 7572151 ~ 7581205 (+) True LOC103028022
XM_022679539.1 mRNA downstream 182391 7613959 ~ 7655049 (+) True vwf
TU211750 other upstream 2214976 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4617264 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 6102997 1265820 ~ 1269379 (+) False G155491
TU210857 other upstream 6104181 1265820 ~ 1268195 (+) False G155491
TU210859 other upstream 6104181 1265820 ~ 1268195 (+) False G155491
TU212659 other downstream 168999 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 1138362 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2509261 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4930883 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 5304064 12735632 ~ 12740999 (+) False hsbp1

Expression Profile