RNA id: TU212487


Basic Information

Item Value
RNA id TU212487
length 3601
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id LOC111194759
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7372376 ~ 7431568 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATATTTATTGGTTTGATATTTGAATTTGAAGCCTAGAGTCAACAAAAATAAGAACAGGTACAGTATTGCatttatacaaaaaagaaaccacCAGCATCAGTTTACAATACAAAAGGCATTTGACTATATGATGGTAGATGTTAGACCTGTAGTCCAGactgacacaaacacacagatgcTGAAGGCAGTAGATACCATACAATACTGGACCAGGTGATGAAtatgctttagttttttttttgtatacatgTTATCATTAACATCAGTCCAACTTTAAATTAGATGTGTTAGTTATGAATGTGGGGTTTAGGTTGATTAATAACCTGATCTCAAGTACACTCAGGAAAACTCTCTAAAAGGTATAATGCAACATAGTCCCATGACAGGTGAGTACTGTCACTGATATTAAAGACACCCAAAGTAAAGCTGGATATTAAAGTGTCAAACAGATTAGTTTTACGTAGCATGCCCAGGTGTAGCTGCTCTTTTAAAGGAGAACAGTTTGAGCCATgagaaatagaaatattaaatatggttCATTAAAGTATCGTTAAGTAATTTCAAGTACCTTGTTTATTCATTAGGATTCATTATTAGTTATTACTAGTTGAACTTCTCATCTTATTAAATTGAAGTACTGTtgtatttatctaaaaaaaatgctcattAACCCTTTACACCCTAGGTTATTTATTCGGCTATTAAAATTAGTAAATGTTTGTAGGATAAGCTAAACTAAACCGTTACcagagtcccacagggttctattttagggcctatTAAATGATGTTAATTGTGACAGTAACGTAGTTTTAAGCTTTCCCTAAATAAGTGTGAGCCCAAATACAGGGTCTAAAGGATTAACTCGCAATTTTTAGAAAAACACAGGAATGTGAACATGTCATGTGCTACCATATGTGCTTCTGCACCTTACTGACCTTAATGACGAGCAAAAGAGCTACATGAAGGGAAAATAAAGCAGCTAGTGAGCAAGTGTGTGCACTTGGAAGACAGGATAAAGAGAGAATACAGACTCCATCGCCACAGACAGTGATCAGAAGGCAGTGTTGAGTTACTGTAGAAGCATACAGTAAAGGTAGAGAATCTTACTAATGCTGTGGAAGGGCAAAAATGTGTTTACGAAGAATATATGTAACCCTGTTTTCCAACaaaatggaaagaaagaaagaagagagacaaATTTAAATCTGATGATAGTTTGAGACTTTGgcaaaactatgaataaatccactgagataaaaaaaaaagagttacatTCAAACACAAGGCCTGGGTCTGATGGACCACATCCTCTgtcccacacatacacacatcccTGCATATTACAAAATAAAGTGTTTGCAAGTTCTCATCAATGTACACAGTAGCATAACACAGTGAAAAAGCACCCTCAATGCGATTACCACCATCATCATACTCATCATCACTGCCTCCTATCTTACAGCTTTTGGTATAAAAATCAAGTTTTCAAAAGTGcaaactgaaacacacacagagattgAGCTTCGTAAAGTAAATCTGCACACATACAATCAAATCATTCATCAGGAAATTAAGTGGTCTGACAGCTGTGAAagcaaagagagaaaataaaaaaaaactcaataaataaaagcactCAATCTTTGTTATTGCCTCTAAATTCACATTCACACCAAAGCTTTGTATTAAGCAAGTAACTACTCATACAAACACATATAATATTCAGTTCAGTTACCTATGAGAAGAATAACAGCCACATTCATACAGTAACTAATATCAGACATGGACAAGGCATTCCTAAAGCAAAGGGGTCTACGAATGAGCCAACTTGTACATTATATTCAagctttaaacatttttcaaaatattatgataaaATACCTAAAGCTTTTATCTGGACGAATAGGTGTTCTAGTTCATCTAATTCAATATGTTTATctgatttattgattattaatacataactacattatattgttttcacattttgacatcatgtgaataatttttttaatggcatAATTTCATTATGAATGGACcaaagaaatatttaatttaaaagataTTCATATATACACTGTTTGTAAACTCGGTATAGGATAATGGGCCAATAATGCATCCCAATTGTACTACTGTGCAACTGATTAAGCTGCAAACAGAAATTCAGTTCAAGTCTgaacaataaacaacaataagCTAAACATTGAGTCTGAGGACCTGGTGTACACAGATCCTGAAAAGACCCTGAAATAAATATacgatcacacacacacacacacactaatgtgTAAACAATGATTCCATAATGCAAGCTCACACAATGATACATTATCTGCAGGTCCTAATACTAGCTACAGAACGCAACCTTATTGCATATACACAGCACTCACTAAACTGAGTTTACCTCGTAGTCTACCCAACACAGTTTCATTATCTCTCGCTCTCAGGCTTGCATACATACTAACTCAGTACTGTGCAGACGTTTTAGGCAGATAAGCAGATCATTTATAATCACTTATCTTAGCAGTAAGTTTAACTGTATATTACATCTGATGCaggtaaacataaatacagtaaagagtaacaaaaaaatgaagaaagtgGCTTCTGTTCTAAAGAAGAACAAAGCTAGGTTCCAGATTTTTCCTGGATGCTGTCAGCCAGCACTCCAGTGGATGTGTTTAATTcctgatttaacatcattaagctctgatttaccaaaccaggtccTGACATGTTGatgtaaagtttttatttttttattgttctaatATTAGTGATTTACTgagatttctctcttttttttttacaggtgtctaaaacttttgcacagtactgtacacacAGTGGTAGAAGGATCTGGCCCATATAGATGAGAATATAAATTTTATAGTGAAAAATGTGTGACATATACTCCTTTCGCAAGAGTATCAATCTAGTTTTAAGGGAGGTGGCTAGGCACCACTCGCCTGGTTCCTGTTGAGGACCTGATTATTTAGGCTGAAACTATTAACAAACGCAACTGAATAAAAGTGGCTTATGGGATCTAGCAGAAGTAAAAGCATATTTACGACAGCTGCAGTGAACCACACCCTTAATTCTCACTTTACTTGTCTTATTAGAGTTCTCTTTTGGAAGTACACTGGTCAGCATGGCTCTGAAGAAAAGGGAGGACCTCACAGCTGTGGGCCCTTAGCAACATTTCTATATTGCCACAGCAATAATGACAGCAAATGGAAGAATCCCAGACTTGTATTCGCTCGACAAGGCTGCATTCAGGCCAGCAGCTGCTGCTATGCAATGGTTCAGATTTCAAAACGGCCTGACTTCATAAGCTGGACTGAAATAAATGCTGGGCTCGGAGAAAATGTGTTAAAGAGGCGTTATATATTTCATAGGTGGAGCAGTGGTGGTCACGGAGATTCACAAGAACACTAGGGTGGCTCGGAAATACGTTTGATACATTGGACCATTACTACTTGGGTTTTCtcCTTTATTCTGCCGTCTGCTCCttaggaggaggtggaggagtaTCTGTGATGGACATCACTACAGTGCTTGCAGCCATACCACCTGATGTTTTGGAATCAGATTCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212484 lncRNA upstream 14137 7351997 ~ 7412688 (+) True G156731
XR_002651235.1 lncRNA upstream 28468 7389106 ~ 7398357 (+) False LOC111194759
XR_002651234.1 lncRNA upstream 28468 7389106 ~ 7398357 (+) False LOC111194759
XR_002651231.1 lncRNA upstream 28468 7389106 ~ 7398357 (+) False LOC111194759
XR_002651232.1 lncRNA upstream 28468 7389106 ~ 7398357 (+) False LOC111194759
TU212636 lncRNA downstream 123072 7553653 ~ 7558957 (+) True G156824
TU212683 lncRNA downstream 321622 7752203 ~ 7755664 (+) True G156856
TU212684 lncRNA downstream 321751 7752332 ~ 7755664 (+) False G156856
TU212767 lncRNA downstream 406174 7836755 ~ 7844894 (+) False G156916
TU212769 lncRNA downstream 406174 7836755 ~ 7841481 (+) True G156916
XM_022679529.1 mRNA upstream 54930 7358284 ~ 7371895 (+) True LOC103040931
XM_022679528.1 mRNA upstream 54930 7361055 ~ 7371895 (+) False LOC103040931
XM_022679530.1 mRNA upstream 54930 7361055 ~ 7371895 (+) False LOC103040931
XM_022679525.1 mRNA upstream 68633 7324501 ~ 7358192 (+) False c2cd5
XM_007244067.3 mRNA downstream 15562 7446143 ~ 7454434 (+) True LOC103026191
XM_015604457.2 mRNA downstream 94544 7525125 ~ 7540255 (+) True LOC103026791
XM_015604459.2 mRNA downstream 94544 7525125 ~ 7540255 (+) False LOC103026791
XM_007244072.3 mRNA downstream 141570 7572151 ~ 7581205 (+) True LOC103028022
XM_022679539.1 mRNA downstream 183378 7613959 ~ 7655049 (+) True vwf
TU212490 other upstream 22269 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 2269425 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 4671713 2738361 ~ 2755112 (+) True G155776
TU210855 other upstream 6157446 1265820 ~ 1269379 (+) False G155491
TU212659 other downstream 169986 7600567 ~ 7606668 (+) True G156840
TU212948 other downstream 1139349 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2510248 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4931870 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 5305051 12735632 ~ 12740999 (+) False hsbp1

Expression Profile