RNA id: TU212771


Basic Information

Item Value
RNA id TU212771
length 788
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G156916
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7836755 ~ 7938030 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagagagagggaTCGGTCTCTTCTATCCTAAAGACTCGTCTGCTAAAGTAGCTGGAGGTCTGACTGCAGTTCAGCCAGCAGGTTCCTGGATCCTGATGGCCACTGCTACTCTGGTCCACCTGGGCACTTCTTAAGGATTTCTGGGACATGTAGTCcactgcttgcatttttttcttATCTGAGGAGGAGAAAAGTGGAACCCATCTGCCAAGGGATTCGGGCACTCGGGTCTTCTGCCCTTCTTCTAGTAGACGCTATGTTGTGGCCTCCTGCCTTATGGATAGGATGGACACCTCACAGCGTCTCTGGTCAAGGTTCAGCGGACCTGCAGTGGACAGCGCCAGGTCTACTCTGACCTGTCAACGAAGCATAAGACGCTAGAAGCAAACAAACTGACTGAAGACAAAACGTGTAAATCTTCTATTTGGGCAGGTCTACTCTGACCTGTCCCTGAGGAACCTGATGAAATGAACATTAAAACGAAGCCGACGCAACTTTTCCTACTTAccctttcccttttttttgttcGGCTTCTGGCTGTCTGTTGCTTGGTTGGCAGGTTATAGGGATGGCCTGCTGTAAAacaatcaatccttttttttaaggctgggtgcagttttctgattaaataaaaataaaaataaaaattgcaaaaccgtgtcaaccaatatttgccttgtgtaatttttttaagacgCTTTAGACAAAACGGAATCCTTAAGTATGTTATGTGTTTTTCGCACCctacatcattattattagctGAGACTCCCAAATACCCTGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212683 lncRNA upstream 81091 7752203 ~ 7755664 (+) True G156856
TU212684 lncRNA upstream 81091 7752332 ~ 7755664 (+) False G156856
TU212636 lncRNA upstream 277798 7553653 ~ 7558957 (+) True G156824
TU212487 lncRNA upstream 406174 7426825 ~ 7430581 (+) True LOC111194759
XR_002651233.1 lncRNA upstream 438398 7389106 ~ 7398357 (+) False LOC111194759
TU212773 lncRNA downstream 794 7838566 ~ 7898589 (+) False G156916
XR_001518591.2 lncRNA downstream 954 7838726 ~ 7839633 (+) True LOC107197497
XR_001518593.2 lncRNA downstream 3885 7841657 ~ 7844823 (+) True LOC107197499
TU212774 lncRNA downstream 3912 7841684 ~ 7938030 (+) False G156916
TU212775 lncRNA downstream 3912 7841684 ~ 7938030 (+) False G156916
XM_007244089.3 mRNA upstream 1029 7830102 ~ 7835726 (+) True LOC103033491
XM_022679547.1 mRNA upstream 8193 7824010 ~ 7828562 (+) True LOC107197496
XM_007244092.3 mRNA upstream 38746 7783636 ~ 7798009 (+) True LOC103034665
XM_022679545.1 mRNA upstream 66452 7755742 ~ 7770303 (+) True terb1
XM_007244081.3 mRNA upstream 109805 7720499 ~ 7726950 (+) True LOC103030643
XM_015604460.2 mRNA downstream 14153 7851925 ~ 7860510 (+) True LOC103032733
XM_007244087.3 mRNA downstream 24300 7862072 ~ 7866578 (+) True odf3b
XM_022679549.1 mRNA downstream 37252 7875024 ~ 7880960 (+) True rabl2b
XM_022679551.1 mRNA downstream 453390 8291162 ~ 8301780 (+) True LOC103028908
XM_007233848.3 mRNA downstream 585894 8423666 ~ 8432053 (+) True arsa
TU212659 other upstream 230087 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 405187 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 432199 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 2679355 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 5081643 2738361 ~ 2755112 (+) True G155776
TU212948 other downstream 732158 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2103057 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4524679 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 4897860 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 5896173 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile